Bordetella pertussis Tohama I: BP3422
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Entry
BP3422 CDS
T00139
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpe
Bordetella pertussis Tohama I
Pathway
bpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BP3422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpe03019
]
BP3422
03400 DNA repair and recombination proteins [BR:
bpe03400
]
BP3422
Enzymes [BR:
bpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BP3422
Messenger RNA biogenesis [BR:
bpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BP3422
DNA repair and recombination proteins [BR:
bpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BP3422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CAE43685
UniProt:
Q7TTN9
LinkDB
All DBs
Position
complement(3629991..3631811)
Genome browser
AA seq
606 aa
AA seq
DB search
MSDPRALGVLARVFGYESFRGDQQAIVEHVIGGGDALVLMPTGGGKSLCYQVPALVREGT
GIVVSPLIALMQDQVDALTELGVRAAFLNATQDWRVAREVEQAFLAGELDLLYVAPERLL
TDRCLQLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSMLHERWPEVPRIALTATATAA
TRSEIAQRLALDEARHFVASFDRPNIRYRIVEKNEVRRQLLDLIRSEHEGESGVVYGLSR
ARVEETADFLCANGVNALPYHAGLSPAVRAANQARFLREDGIVMVATIAFGMGIDKPDVR
FVAHIDLPKSVEGYYQETGRAGRDGLPASAWLAYGLQDVVQQRRMIDESPGDDAYRRRLG
QQLDAMLGLCETVECRRVRLLAYFGQTITACGNCDVCLEPPQAWDGTVAAQKVLSAVYRL
WKERGQRYGAGHIIDILRGKSTDRTRQHDHETLSVFGVGADLSENAWRGVLRQLLAQGLL
AVDHEGFGTLALTEGSRAVLKGEHQLMLRREAEKKPRSSRAGARARPDPIDLPAEAKPVF
ESLRSWRGEVAKSNGVPAYVIFHDATLREIALARPESLDDLSHISGVGARKLQAYGEEIL
RCVQRP
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacccgcgcgccctgggcgtgcttgcgcgcgttttcggttacgaatccttccgt
ggcgaccagcaagccatcgtcgagcacgtcatcggcggcggcgacgcgctggtgctgatg
cctaccggcggcggcaagtcgttgtgctaccaggtgcccgcgctggtgcgcgaaggcacc
ggtatcgtggtttcccccctgatcgccctgatgcaggaccaggtcgacgccctgaccgaa
ctgggggtgcgggccgcgtttctcaatgccacccaggattggcgcgtggcgcgcgaggtc
gagcaggcattcctggccggcgagctggacctgctctacgtggcgccggagcgcctgctg
accgaccgctgcctgcaattgctcgagcgcgggcgcatcgccctgttcgccatcgacgag
gcgcactgcgtctcgcaatgggggcatgatttccggcccgaatacctcgggctgtcgatg
ctgcacgagcgctggcccgaggtgccgcgcatcgcgctgacggccaccgccaccgcggcc
acgcgcagcgagatcgcgcagcgcctggccctggacgaagcccgccatttcgtggccagc
ttcgaccgtcccaatatccgctaccgcatcgtcgagaagaacgaagtgcggcgccagctg
ctggatctcatccgcagcgagcacgaaggcgaatcgggcgtggtgtacggcctgtcgcgc
gcccgcgtcgaggaaaccgccgacttcctgtgcgccaatggcgtcaacgccttgccctac
catgccggtctgagcccggcggtgcgcgccgccaaccaggcgcgcttcctgcgcgaggat
ggcatcgtcatggtggccaccatcgccttcggcatgggcatcgacaagcccgacgtgcgt
ttcgtggcgcacatcgacctgcccaagtcggtcgaaggctactaccaggaaaccggccgg
gccggccgcgacgggctgccggcctcggcgtggctggcctatggcctgcaggacgtggtg
cagcaacgccgcatgatcgacgagtcgcccggcgacgatgcctaccggcgccggctcggc
cagcagctcgatgccatgctgggcctgtgcgaaaccgtcgaatgccggcgcgtgcgcctg
ctggcttacttcgggcagaccatcacggcttgcggcaactgcgacgtctgcctcgaaccg
ccgcaggcctgggacggcacggtcgccgcgcagaaagtgctgtcggccgtgtaccgcctg
tggaaggagcgcggccagcgctacggcgccggccatatcatcgatatcctgcgcggcaag
agcaccgaccgcacgcgccagcacgaccacgaaaccctgagcgtattcggcgtgggcgcc
gacctgtccgagaatgcctggcgcggcgtgctgcgccagctgctggcccagggcctgctg
gcggtcgatcacgagggtttcggcaccctggcgctgaccgagggcagccgcgccgtgctc
aagggcgagcatcagctcatgctgcgccgcgaggccgagaaaaagccgcgcagctcgcgc
gcgggcgcccgcgcgcggcccgaccccatcgacctgccggccgaggccaagccggtgttc
gagtcgctgcgcagctggcgcggcgaggttgccaagagcaacggggtgccggcctatgtg
atcttccacgatgccaccctgcgcgagatcgcgctggcccggccggagtcgctggacgat
ctcagccacatcagcggcgtgggggcgcgcaagctgcaagcctacggcgaggaaatcctg
cgctgcgtgcagcgcccgtag
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