KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110153968
Entry
110153968         CDS       T05002                                 
Symbol
rad50
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03440  Homologous recombination
bpec03450  Non-homologous end-joining
bpec04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    110153968 (rad50)
   03450 Non-homologous end-joining
    110153968 (rad50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    110153968 (rad50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpec03032]
    110153968 (rad50)
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110153968 (rad50)
DNA replication proteins [BR:bpec03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    110153968 (rad50)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     110153968 (rad50)
    BRCA1-C complex
     110153968 (rad50)
   NHEJ (non-homologous end-joining)
    MRX complex
     110153968 (rad50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 AAA_15 SbcC_Walker_B SMC_N ABC_tran zf-met AAA_29 AAA_13 AAA_16 AAA_22
Other DBs
NCBI-GeneID: 110153968
NCBI-ProteinID: XP_020773557
LinkDB
Position
Unknown
AA seq 1310 aa
MSKIDKMSILGVRSFGIEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGEKVTVHRSMSCTQKAKNYSFKSLEQVITR
IKDGEKVSLSSKCGELDREMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKDKFDSIF
AATKYIKALETMRQQRLKQSQTVKECQVELRYLKQNKEKAQQIRETVATKEAQLMASKDS
VQNIESQIDPLENRLMDIDMKLGKVMKLDNDIKALESRKRQMEDDNRELEETMEQVFQGS
DEQLQDLYQNHQKTVKEKERRLTECQRDLERAGRECQRLNRVKADLLVEQGRLQLEADRH
SQNIKNRDSQVRSLSSFLELEGYDRTPFTKLQLESFHRQVSQRLEQEKETLSKSLADLQE
KAHQKQHSIDEMRDKKAGLERTVELKRDLQTKKQQELKNVKTELQRLECSSSRLQELETE
LAKAERELQTTLQNSNVDELKAEVLDLQREKAELDRTQRQLDQEMEILNTHTTARTQMDM
LKKDKTDKEEQVRKIKSRHSEDLVSLLGHFPNKRELEDWIYSKSKEINSTRDRLAKLNKD
LASSEQNKSHIGAELRKKEQQLTSDQEKFFEVCGSQDLESDLSKVQDDLEKISKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVISDMQSKLRLVPDKLKNTEQDLK
RKERKKEEMMSLRPVRESIARLQEKELPELRNRLQAVNRDIERLKGEVETQETLLGTLMS
EEETAKVCLQDISLMDRYLMDLKEVERKIAQQATKLQGVDLTRTIQQVSQEKQETQHKLD
TTSSKMDLKRKLIQDQQEEIQRLKSSVNETRAEKLQLSSDMQRQQQLEEQCVEFTADIKA
LSRDITDAKEQLSPLSAALDKLQQEKQEILEHNRQKQEEGQEKLNAIKERVKVVNTLERE
ISKYTEEGKNEYKEQKESELQETSQQLHEADKQKEKINKDIGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVEAKREVLLKDMGNMQVLQLRQXETQRKLEDLKKNRSIALGRQKGFE
EEILHYRKELREDQYDKAEERYKNKMIVMRTTELVIKDLDLYYKALDQTIMKFHSMKMDE
INKIIRDLWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGRCS
AGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQRNF
QLLIITHDEDFVELLGRSSYIENFYRIRKNQDQNSEITKCSISSLSSYLH
NT seq 3933 nt   +upstreamnt  +downstreamnt
atgtcaaaaatagacaagatgagcatcctcggggtgcggagctttgggatagaggacaaa
gacaaacaagtcatctctttctttagtcctctgactgtgctggtcggacccaatggagca
gggaaaacgacaattattgaatgtctaaaatatgcaacatctggtgaactgcctccaggg
tcaaaaggaggtgctttcgtccatgatccaaaggatgcccacgaaacggatgtgagagct
cagattcgtcttttattcaccgatgtcaacggagagaaagtgaccgtccatcgctccatg
tcctgcacccagaaggccaagaactactcatttaaaagcttagaacaggtcatcacccga
attaaggatggagagaaggtgagcttgtcgtccaaatgtggtgaactggacagagaaatg
atttcggctctgggtgtgtccaagcctgtgttaaaccatgtgatcttctgccatcaagaa
gagtccaactggcccctgagtgagggcaaagcactgaaggacaaatttgattccatcttt
gctgcaaccaagtacataaaggctctggaaaccatgcgtcagcaacgtctcaaacaaagc
cagacggtgaaggagtgccaggtggagctgcgctacctgaagcagaacaaagagaaggct
cagcagatccgcgagactgtggccaccaaggaggcccagctcatggcctccaaagacagt
gtgcagaacatagagagccagatcgaccccctggagaaccgcctgatggatatcgacatg
aagctaggcaaagtgatgaagctggacaatgacattaaggccttggaaagcagaaagagg
cagatggaggatgacaacagagagctggaggagaccatggagcaggttttccaaggctca
gatgagcagctgcaggacctgtaccagaaccaccagaagacggtgaaggagaaggagcgc
agactgaccgagtgccagagagatctggagagagcaggccgcgagtgtcagaggctcaac
cgggtcaaagctgacctgctggtggagcaaggtcgtctccagctcgaggctgaccgtcat
tctcagaacataaaaaatcgtgactcccaggttcgctctctctcctcttttctggaactg
gagggatacgaccggaccccgttcactaaactacagctggagagtttccatcgtcaggtt
tctcagagactggagcaggagaaagagacacttagtaaaagtctggctgatctccaggag
aaggcgcatcagaagcagcattccatcgatgaaatgcgtgataaaaaggcaggtctggag
aggaccgtggagctgaagagggacctgcagaccaagaagcagcaggagctcaagaacgtg
aagactgaactgcagagactggaatgctcatccagtcgcctgcaagagctggagaccgaa
ctggccaaagccgagcgtgagttacagaccaccctgcagaactccaacgtggacgagttg
aaggcagaggttttggatcttcagagggaaaaggcggagctggaccggacccagagacag
ctggatcaggagatggagattctgaacactcataccactgcacgcactcagatggacatg
ctcaagaaggacaagactgataaagaggagcaggtcagaaaaatcaaatctcgtcacagt
gaagatttggtgtcgctgctcggacacttcccaaacaagagagagctggaggactggatc
tacagcaagtccaaggagatcaacagcaccagggaccggctggccaaactcaataaggac
ttggcatcgagtgagcagaacaagagccacattggggctgagctgcgtaaaaaggagcag
caactaaccagtgaccaggagaagttttttgaagtgtgtgggagtcaggacctggagtct
gacctgagcaaagttcaggacgatctggagaagatctcaaaacaaagagccatgttagct
ggagccacggcagtgtatacccagttcatcagtcagctcacagaggagcgagagccgtgc
tgccctgtgtgccagcgcaccttcccctccgagtccgacctccaggaagtgatcagcgac
atgcagtccaagctccggctggtccccgacaaactcaaaaacacagagcaggatctgaag
aggaaggagaggaagaaggaggagatgatgtctctcagacctgtcagggagtcaatagct
cgcctgcaggagaaggagctgccggagctgaggaacaggttgcaggcggtgaacagggac
atcgagcggctaaagggggaagtggagactcaggagacactgctcgggactctcatgtct
gaggaggagaccgccaaagtctgtctgcaggacatctccctcatggacagatacctgatg
gacctcaaagaagttgagaggaaaatagcgcaacaggcaactaaactgcagggagtggac
ctgaccaggaccattcaacaagtcagtcaggagaaacaggagacgcagcacaaactagac
accacctccagtaagatggatctgaaacgtaaactgatccaggaccagcaggaagagatc
cagaggctgaagagctccgtgaatgagaccagagccgagaagctgcagctcagcagtgac
atgcagaggcagcagcagctagaggagcagtgtgtggagttcactgctgacatcaaggct
ctcagcagagacatcacggacgccaaagagcagctgtctcctctgtcggcagcactggac
aaattgcaacaggagaaacaggagattttggagcataacaggcagaaacaggaggagggc
caagagaagttaaatgccattaaagagagagtgaaagttgtcaacacattggagcgggag
atcagcaaatatacagaagagggaaaaaatgaatacaaagagcaaaaagaatcagagctt
caagaaaccagccaacagcttcatgaagcagacaaacagaaagagaaaatcaataaggac
attggcaacatccgacaggacatagatactcaaaaggtgcaggagcgctggctgcaggac
aacctcaccctgagaaagcgagttgaggagctgaaggaggttgaggccaaacgagaggtt
ctgctcaaagacatgggcaacatgcaggttctgcagctcagacagtaagaaacacagcga
aaactggaggacctgaagaagaaccgcagtattgctctgggtcgtcagaaaggatttgag
gaggagatactacactataggaaagagctgcgtgaggaccagtatgacaaagctgaagag
cgctacaaaaacaagatgatcgtgatgaggaccactgagcttgtcatcaaagacctggac
ttgtactacaaggccctcgaccagacaatcatgaagtttcacagcatgaagatggatgag
atcaataagatcatcagggacctgtggcgcagcacatacaggggccaagacattgaatat
gtggagatccggtctgatgtggatgagaactcctctgctggagtcaagcgcagagtttac
aattacagagtagtgatggtgaaaggagacacggctttggacatgagggggcgctgcagt
gctggtcagaaggtgctggcgtcgctgatcatccgtctggctctggctgagaccttctgc
ctgaactgtggcattctggccctggatgaacccaccacaaacctggatcgagagaacata
gaatccctggcccacgcacttgtcgaaatcattaagagccggtcccgtcagcgaaacttc
cagctgctcatcatcactcacgatgaggactttgtggagctgctggggcgctccagctac
atagaaaacttttacagaatccgcaaaaaccaggaccaaaactctgagatcacaaagtgc
agcatctcttcactgtcctcctatctacactga

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