Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110153976
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Entry
110153976 CDS
T05002
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110153976 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpec03041
]
110153976 (ddx46)
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110153976 (ddx46)
Spliceosome [BR:
bpec03041
]
Complex A
U2 snRNP components
U2 related factors
110153976 (ddx46)
Complex B
110153976 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
110153976
NCBI-ProteinID:
XP_020773566
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGSHSKSRSPDKRSKKEERERGRRERSRSRERRRSRSRDRKRP
RRSRSRDRRRSRSRDRRSRGKRSRSGSKSRKTDEKSRSKEKDSLDSVTEKKKVKEEKEDE
KVVDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKWSLEDDD
DDDDDTSAPMEGDDDEEGEGKETKDKESKEDSKEGLDQDKETEMEQETEEDDVDPLDAYM
EEVKQEVKKFNMGGLNDKQKGAMMVTKVVTVVKTKKGPNIHKKKGELMENDQDAMEYSSE
EEEVDLQTALTGFQTKQRKVLEPVDHGKIEYEPYRKNFYVEVPELAKMSPEEVTAYRAEL
EGITVKGKGCPKPIRTWVQCGVSMKILNALKKHNYEKPTPIQTQAIPAIMSGRDLIGIAK
TGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECKKFSKPLGLRVV
CVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLDEADRMFDM
GFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHV
LVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPCLSLHGGIDQYD
RDSIINDFKTGVCRLMVATSVAARGLDVKQLILVVNYGCPNHYEDYVHRAGRTGRAGNKG
YAYTFITEEQARYAGDIIKALELSGSAVPPELEQLWASFKDQQKAEGKSIKSSSGFSGKG
FKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKRVKDLAAPGAAL
PGAGVVPTTAASTGGTGGAPASAGNIQKLEMAKRLALRINAQKNLGAEAQDVMQQATNAI
LRGGTIVTPSVSAKTIAEQLAEKINAKLNYTPVEKMEEEKQGAEQTETVKRYEEELEIND
FPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQK
AKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgtgaatctagacactacagaaagcggtcttcatcgcggggtcgctctgggagc
cattcaaagagccgctctccggataaacgctccaaaaaagaggagagagagcgaggccgg
agagagagatcacggagccgagaacgccgaaggtcccgatccagagacaggaaaagacca
agacggtcaagaagtagagacagacgcaggtccaggagtcgagatcgaagaagccgagga
aaaagatcccgatcgggaagcaaaagccggaaaacagatgagaagtcgaggagtaaggag
aaggacagcttagactctgttactgaaaagaaaaaagtcaaagaggagaaagaagatgaa
aaagttgtagaccaggattttgaccagaacaaactggaggaggagatgaggaagaggaag
gagcgtgtggagaagtggagagaggagcagaggaagaaggccatcgagaacatcggggaa
atcaagaaggagctcgaggagatgaagcagggcaagaagtggagcctggaggacgatgac
gatgatgacgatgacacttcagccccaatggagggagatgacgatgaggagggtgaagga
aaggagacgaaagacaaggagtctaaggaggactctaaggagggattagaccaggacaag
gagacagaaatggagcaggagacagaggaggacgatgtagatcctctggacgcatacatg
gaagaggtcaaacaagaggtcaagaagttcaacatgggtggactcaatgataagcagaag
ggagccatgatggtgaccaaagtggtgactgtggtgaagacgaagaaaggtccaaatatt
cataagaaaaaaggagagttgatggagaacgaccaggacgccatggagtactcttcggag
gaggaggaggtggacttgcagactgctctcacaggttttcagaccaaacagaggaaggtc
ctggagccggtggatcatgggaaaatcgagtatgagccctatcggaaaaacttctatgtg
gaagtgcccgaactcgccaagatgagccctgaagaggtgactgcataccgcgcagagctc
gagggcatcacagtcaaagggaaaggctgccccaaacctattaggacctgggtccagtgt
ggagtctccatgaagatcctcaacgcactgaagaagcataactatgagaagcccaccccg
atccagacccaggcgattcctgccatcatgtcaggccgtgacctcatcggcattgccaaa
acgggaagtggaaaaactatcgccttcctgctgcccatgttcagacatatcatggaccag
cgccccctagaggagtccgaggggcccatctccgtgatcatgaccccgactcgagagctg
gctctgcagatcaccaaagagtgtaagaagttctccaaacctctgggactcagagtggtg
tgtgtgtacggagggactggcatcagcgaacagattgctgagctgaagagaggagcagag
atcatcgtgtgcactccaggcagaatgatcgacatgctgggagccaacagcggtcgcgtc
acaaaccttcgcagagtcacttatgttgtgctggatgaagctgacaggatgtttgacatg
ggctttgaacctcaggtgatgcgaatcgtagataacgttcgtccggacagacagacggtc
atgttttcagccactttccccagagccatggaggctttggcccgaaggattctgtccaaa
cccatcgaggtgcaggtgggagggaggagcgtggtgtgctctgacgtcgagcagcacgtg
ctggtgatcgaggaggagaagaagttcctgaagctgttggagattctgggtcattatcag
gagaagggctctgttattatatttgtggataaacaggagcacgccgatggactgctcaaa
gatctgatgaaggcttcctacccctgtctgtccctgcacggaggcatagaccagtacgac
cgcgacagcatcataaatgactttaaaacaggcgtatgccgtctgatggtggccacgtct
gtcgcagctcgaggtttggacgtgaagcagctgattctggtggtgaactacggctgcccc
aaccactacgaagactatgtgcaccgcgctgggaggacagggagagccggcaacaagggc
tacgcgtacacattcatcacagaggagcaggcgcgttacgctggtgacatcatcaaagct
ctggagctctcaggctccgctgtccctcctgaactggagcagctctgggcctccttcaaa
gaccaacagaaagcagaaggaaagtccatcaaaagcagcagtgggttctctggtaaaggc
tttaagtttgatgagacagagcacgctctggccaatgagaggaagaagctgcagaaggct
gctctgggcctgcaggactcagatgatgaggacggagcactcgatatcgaggagcagatc
gagagcatgtttaactcaaagaaacgtgtgaaggacttggcggctccaggagccgccctc
ccaggagctggagtcgtgcccaccaccgcagcctcgaccgggggcacaggaggagcaccc
gcctctgccggaaacatccagaaactggagatggcaaaacgactggcgcttaggatcaat
gctcagaagaacctgggagctgaggcacaggacgtgatgcagcaggccacaaatgccatc
cttcgcggtggcaccatcgtgacgccatcagtgtcggccaaaaccatcgcggagcagctc
gctgagaagatcaacgccaaactcaactacacgcccgtggagaagatggaagaggagaaa
cagggggcggaacaaacagagacggtcaagaggtatgaagaagagctggagatcaacgac
ttccctcagaccgcgcgttggaaggtcacgtcaaaggaggctctgcagaggatcggagag
tattctgaagcagccatcaccatcagaggaacgtacttccctcctggaaaagagcccaaa
gaaggagagcgcaagatctacctggccattgagagtgcgaatgaactggctgtacagaaa
gccaagactgaaatcacacggctgatcaaagaggagctcatcagactccaaaactcgtac
cagccgacgagcaagggccgatacaaagtgctctga
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integrated database retrieval system
