Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110154394
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Entry
110154394 CDS
T05002
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110154394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bpec03009
]
110154394
Ribosome biogenesis [BR:
bpec03009
]
Eukaryotic type
Pre-60S particles
RNases
110154394
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
KIX_2
Zwint
GPS2_interact
HDR1
Med15_N
Motif
Other DBs
NCBI-GeneID:
110154394
NCBI-ProteinID:
XP_020774047
LinkDB
All DBs
Position
Unknown
AA seq
1014 aa
AA seq
DB search
MTAFSGLFAKINCSLSERALCVRPHCVFKHANEEQERHTCDLSDKPTTDLTATEEATDEC
LQELERINREIESVKHQVEEEQRRLSHYQSKNVAQNSYSSHTSPSAPRAKPEKYILDSTK
PRTDLEYDPLSNFSSDLRSYCSSNREHKTRNGQDSKRRGRATLNQRKLNVQAPPPPKRSP
EHSDSNEEDILIIDIPPSPDKVKVKTKTVLNLASVNVSEKIKTVEQSEKPLNAMSSKNVT
SNNFIPTDENIFVKMNQHLSNYLNPPQPCEQKKTLHDRNSNANALPVNEAPTSQIQKSEA
PGDNINTGDSPNLLSIKSRKNQEQNHPIAPQQLQMVFVGSLCEPQDILAAAKLTSNVEMQ
SAINDRQVPSKKEQVIMIDSSTEDELNYSDLDISESDPDEECYRIFMEANGEDPNLNPNC
KPPEPPPDFQSGTKVRPQPQVLVPVRAPVSSAPLAPALPMIPKVEQEASVLTTSIRAGQA
SISKGRSEAQCAQTTQCSATKKPVSYVSYIPLGATVIDVGNNLHLVLPEGTFSVSDSPGQ
VNSVLTPITPANTHSMTIRQAGHPSAPTQQRCTSQPVIIPPLARRPIMATTSANQCSSTT
ASVVKPVATKRKLKQQCETVKVPHDIRQSYVNKFTEEFMKTTSNVNDAFEKALAEEKTVY
NRSANKLKYLSVAVNALKRLRNQSCGAVEGEGSFRETVTKGHIPLNRSMLNGKGVVMLYE
CLKDYVLTEEMLIERNFPLQNPEKPGSAILFADNKKSTSYSLRKLCCRCGATYSVSRTGK
HTRKEECTYHYGKGVENKVPGGVETRYSCCQGVMGSPGCQVFKLHVCNSLSMDGFVSTAR
RDPADKSCPGVFSLNCEMCYTIYGLELSRVTVVNTSLQIVYDTFVRPNNEVIDYNTRFTG
ISQEDVERHSHSLKEVQDALLSFISADTILIGHSLETDLCVLKLLHGTVVDTSVVFPHRL
GSPHILSLHNLTAEYLRKIIQESVCGHDTAEDAVACMELMIWKAKEDRKLKKLQ
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgttcagcggcctttttgcaaaaataaactgtagtttatctgaacgcgcactt
tgtgtacgacctcattgtgtgttcaaacatgccaatgaagaacaggaaaggcacacgtgt
gacttatcggataaaccaacgacagacttgacagctactgaagaggccactgacgagtgc
cttcaagaacttgagcggataaaccgggagattgaaagtgtgaagcaccaagttgaggaa
gagcagaggagactttcacactaccagagtaaaaatgtagcccaaaattcatattcttca
cacacctctccttcagctcctcgcgccaaaccagaaaagtacatactcgacagtacaaag
cctaggacagatttggagtatgaccctctctccaatttctcttctgatctgcgctcctac
tgctcatcaaatagggagcacaaaactagaaatgggcaagattcgaaaagaagaggacga
gctacactaaatcaaaggaaattaaatgtgcaggcgcccccacctccaaaacggtctcct
gagcattcagattcaaacgaagaggacattttaataattgacattcctccttcccctgac
aaagttaaagtcaaaacaaaaacagttttaaacttggcctctgttaatgtaagtgaaaaa
atcaaaactgtggaacaaagcgaaaaacctttaaatgcaatgtcttctaaaaatgttaca
agcaataacttcataccaactgatgagaatatttttgttaaaatgaatcagcatttgtct
aattatctaaacccaccacaaccatgtgaacagaagaaaacactacatgatagaaactcc
aatgctaatgctctcccagttaatgaggctccaacaagtcagattcagaaatctgaagct
cctggtgataatataaacactggtgattctccaaacctactatcgatcaaatcaagaaaa
aatcaagagcagaaccaccctattgcaccgcagcaactacagatggtgtttgttgggagc
ctttgtgaacctcaggatattttggcagctgcaaaattgacaagtaatgttgaaatgcag
tctgccataaatgacaggcaagtcccatccaaaaaagaacaagttataatgattgactct
agcactgaagatgaactaaattactcagatttggatatatctgagagtgatccagatgag
gaatgttacaggatttttatggaggcaaatggagaggaccccaaccttaaccctaactgt
aagccacctgaacctccacctgactttcagtcgggtacgaaggtccgaccacagccccag
gttcttgtacccgtacgggcgccagtgtcctcagctcctctagcacctgcactgcccatg
atccccaaagtggagcaggaggcttcagtattgaccacgtccatcagagcaggacaggcc
tcgatttccaaagggcgctctgaagcccaatgtgcacaaaccacccagtgttctgccaca
aaaaagccagtatcatacgtcagttatattcctctgggagctacagtgattgatgtggga
aacaacctgcacttagtcctgccagaggggactttctcagtgtctgacagccctggacaa
gttaactcagtcctaactcccattacaccagcgaatacacactcaatgaccatcagacag
gctggtcatccgtctgcaccaacacaacagaggtgcacctcccaacctgtgatcatcccc
cctctggctcgcaggccaatcatggccacaacaagcgcaaatcagtgttcctcaactaca
gcttctgtagtgaagccagttgctacaaaacgtaaattaaagcagcaatgtgagactgtc
aaagtgccccatgacataaggcagagttatgtgaataagtttacggaagagtttatgaag
accacaagtaatgtgaatgacgcttttgaaaaggcacttgctgaggaaaagactgtctat
aatcgtagtgcaaacaaattaaaatatctgagtgttgctgtaaatgcactgaagaggctc
aggaaccaaagttgtggagcagttgaaggtgaggggtctttcagagaaacggtaacaaaa
ggccacatcccattgaaccggagtatgctgaatggaaaaggggtggtaatgttgtatgag
tgtttaaaggactatgttttgactgaggaaatgctgattgaaagaaactttccactccag
aatccagaaaaacctggaagtgctattctttttgcagacaacaaaaaaagcacatcatat
tcccttcggaaactgtgctgccgttgtggtgctacatactctgtgagtcgcacagggaaa
cacactcgaaaggaggagtgcacttatcactatggaaagggggttgaaaataaagtgcct
ggcggtgtggagacacgctacagttgctgtcagggagtaatgggatcacctggctgccaa
gtgttcaagctgcatgtgtgtaattccttaagcatggacgggtttgtatcaactgcacga
agagatcctgcagataaaagctgtcctggagttttctccttgaactgtgaaatgtgttat
accatttatggtttggagttgtcaagagtgactgtggtcaacaccagtcttcagattgtt
tatgacacctttgtgagaccaaacaacgaggtaatcgactataatacaaggtttactggg
atcagtcaggaagatgtggagagacactctcactcccttaaagaagtccaagatgctcta
ttaagcttcatcagtgctgatacaattctaattggtcacagcctagaaacagacctgtgt
gttctcaagttgctacatggaacagtggtggacacatctgtggtttttccccatcgtctt
ggttcccctcatatactctcactacacaacctcacagctgaatatctcagaaagatcatc
caagagagtgtgtgtggccatgacactgctgaagatgctgttgcatgcatggaacttatg
atctggaaggccaaagaagacagaaaactgaaaaaattgcaataa
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