KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110155021
Entry
110155021         CDS       T05002                                 
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5 isoform X1
  KO
K10756  replication factor C subunit 3/5
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03030  DNA replication
bpec03410  Base excision repair
bpec03420  Nucleotide excision repair
bpec03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110155021 (rfc5)
   03410 Base excision repair
    110155021 (rfc5)
   03420 Nucleotide excision repair
    110155021 (rfc5)
   03430 Mismatch repair
    110155021 (rfc5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpec03032]
    110155021 (rfc5)
   03036 Chromosome and associated proteins [BR:bpec03036]
    110155021 (rfc5)
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110155021 (rfc5)
DNA replication proteins [BR:bpec03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110155021 (rfc5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    110155021 (rfc5)
Chromosome and associated proteins [BR:bpec03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110155021 (rfc5)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110155021 (rfc5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    110155021 (rfc5)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_14 RuvB_N AAA_16 AAA_assoc_2 AAA_24 ResIII DEAD DUF815 PhoH AAA_7 AAA_19 ATPase_2 AAA_5 AAA_30 TIP49 DNAX_ATPase_lid Gp44_lid AAA_2 Mg_chelatase T2SSE Thioredoxin_6 RNA_helicase
Other DBs
NCBI-GeneID: 110155021
NCBI-ProteinID: XP_020774730
LinkDB
Position
Unknown
AA seq 362 aa
MASMSSKASQQPRNLPWVEKYRPQSLDDLISHKDILSTIQRFISEDRLPHLLFYGPPGTG
KTSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILD
EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLVPEQMIPR
LEHVIKEENIDITPDGMKAIVTLSSGDMRRSLNILQSTSMAYGKVTEDTVYTCTGHPLRS
DIANILDWSLNQNFTTAYNQILELKTLKGLALHDILTEVHMLIHRGKRRSVFNFVTYLFE
REINLYICLFLVDFPPSIRMGLLIKLADIEHRLASGTNEKIQLSSMVAAFQAVRDLVTSE
AA
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcttcaatgagcagcaaagcatcgcaacagccaaggaacttaccatgggttgaaaag
tacagaccacagtccctggatgacttgatttcacacaaagatattctaagcactattcag
aggttcataagtgaggacagacttccacaccttttgttctatgggcctccaggaacaggc
aaaacatccaccatcctggcctgtgccaagcaactgtacaaggagaaggagttcaattcc
atggtgttagagctcaacgcatctgatgatagaggtattgatgtagtacgaggacccatt
ctcagttttgccagcacacggaccatttttaaaaaaggtttcaagctggttatactggat
gaggctgatgccatgacccaagatgcccagaatgctttgcggcgagttattgaaaagttc
acggagaatacgcggttttgtttaatctgcaactatctgtccaaaatcatcccggctctt
cagtcacgatgcaccaggtttcgctttggccctctggttcctgagcagatgatcccacga
ctggaacacgtcatcaaagaagaaaatattgacataactccagatggaatgaaggctatt
gtgacattatcatcaggggatatgagaagatccctgaacatactgcaaagcaccagtatg
gcatatgggaaggtcacagaggacacagtctacacatgcacaggtcaccctcttcgctct
gatattgccaacatcctggattggtcgctcaaccagaattttaccacagcttacaatcaa
attcttgagctgaaaacactgaaaggtttggcactgcatgatattctcactgaagtccac
atgctcatacacagaggtaagaggcgaagtgtatttaattttgtgacttatttgtttgaa
agagaaataaatctatatatttgtttatttttagttgacttcccaccttccattcggatg
ggcctgctcattaagttggctgacattgaacacaggttggcctcaggaaccaatgagaag
attcaactaagctccatggttgcagctttccaggcagtacgggacctagtgaccagtgag
gctgcttag

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