Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110155217
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Entry
110155217 CDS
T05002
Symbol
nrde2
Name
(RefSeq) LOW QUALITY PROTEIN: protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110155217 (nrde2)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110155217 (nrde2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
110155217
NCBI-ProteinID:
XP_020774937
LinkDB
All DBs
Position
Unknown
AA seq
1176 aa
AA seq
DB search
MALFPAFAEEVSVKAEDSPKEFDWLKNESFQTQDAVSIHCRFLEKTVGTQGATGSRDASS
VEELDEDESKVHHKKKRKKSEKKKKKRKKLKKLRGHSDSSGSDSETIFPSDLKKEQDTDR
PESDVFASKFIWLDDLTSAQKEAFCVDQKPDPANWTYKSLYRGDVARYRRKGASILGIDP
HREGVTWDDSESNKKQKAKDKKNRGGGGFGDERYYSTANQRLLISESPVLLLPTETPENC
INRGAPFLAFCDNKDNTIHNLSIDGSQSTLNPLGVYDPSTALWMQGKGKSDETDQKQDTQ
TTESSFVTKKTEDFNKRLREQPEDTELWIQFIHYQDELSTTVFIDEQRSDHTERSKSSYR
AVLEKKLSIADRAVALNPSCISLQLERLKICQELWESSALAKEWKKLVFLHPNSAPLWKE
YLLFMQSYFSNFSVSKVNSAFGKCLSTLSAVRDGSMVSHPALPGLEEDMLDIFIQQCHFL
RQAGHSEKATSLFQAMIEFTFLKPESLQKLSTKQQVEFFETFWDSGEARVGEPGSKGWKT
WMLQQERGGWVQPSAEEEEDEDEEEEEVKDQNQPRWKVWLDVESSREAGHWLPWRPDKSK
GQTEDDCEDPDRQVLFDDIGQSMICLSSPDLQLRLLLHFLSFLGLPVNITTSNQTGMLLE
NLLLLTQNDNFARPLTFPELLHTGMNSVGQMTTLQGMPKCIGLGKQGGKFLNNIIAMIQP
LLPTHHRAILFLSQIQNEKLKVLQSACSSNKKHIHSQGKKSKRIAKRLLXXXXXXXXXXX
XXXXXWREYAHLEWLLGNLDEARKVFVTAAALGGTSGLASQSLCNLTLLWAQLETENALD
IGGRQKDITSSPAVRILTRLAEGTSLSSSEQLSPVSILKARKSYDQALNCTLSTLDQVSL
KQHDKGQSYRGLVGCYALFQYLTVGIKPASDVYALARNRMDELQQRLTGDLKSSEAGYKD
LISNLSSECEALAIQQAALLRYHNKVSVFPLAQLRQMLTAALSTWPYCPALWGIYIQVEN
RYHSAGRARRFFHSIMRNATNVLPGLFAIVAEQQRKQTVDAAQRSCCHGSALPTLPENGL
GHRIRGLFENATKTKMGAHCPLLWRMYMYFLVSDGKVDKAKEIFYKALQNVPWTKGLYMD
AIQLFPEHLQEFVDLMTEKELRLRLPLEELDILLED
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcttcccagcttttgctgaagaagtgtctgtaaaagctgaagattcacccaaa
gagtttgattggttgaaaaatgaaagttttcaaacacaagatgcagtctccattcattgt
cgttttttggagaagacagtggggacacaaggtgccacgggatcgagggatgcaagctct
gttgaagaactggatgaggatgagagcaaagtacatcacaaaaagaagcggaagaaaagt
gaaaagaagaaaaagaaaaggaagaaactcaaaaagctgcgtggtcattctgacagcagt
gggtctgactctgaaactatcttcccaagtgacctaaaaaaggagcaagatactgataga
cctgaaagtgatgtatttgcaagtaaattcatatggcttgatgacctcacgtctgcccag
aaagaggcattctgtgttgaccagaagccagacccagccaactggacctataagtcactt
tacagaggggatgttgccaggtacagaagaaaaggagcatccatattgggcatagaccct
cacagagaaggagttacatgggatgactctgaatcaaataagaaacaaaaagccaaagac
aaaaagaatcgcggaggaggtggatttggagacgaaagatattattctacagcaaatcag
cgattacttatatcggagtctccagtcttattattacctacggaaacgcctgaaaactgc
atcaataggggagcacctttccttgctttttgtgataataaagacaacactatacacaat
ctgagtattgacgggtcacagagtacattaaatcctcttggtgtgtatgacccatcgaca
gctctctggatgcagggcaaaggaaaatcagatgaaactgaccaaaaacaagatacacaa
acaacagagagttcttttgtcacaaagaaaactgaagactttaacaaacgacttagagag
caaccagaggatacagaattgtggatacagtttatacattaccaggatgaacttagcaca
acagtattcattgatgaacaacgcagtgatcacactgagcgatctaaatcatcctatcgt
gcggtgcttgagaaaaagctgagcattgcagaccgtgctgttgccttaaaccccagctgt
atttctttacaacttgagaggctaaagatctgccaagaactctgggagtcctcagctttg
gctaaagaatggaagaagctggtgtttctccacccaaacagtgcacctttgtggaaagag
tatttactgttcatgcaaagctattttagtaacttttctgtgtcaaaagtcaactctgct
tttggaaaatgtctaagcactctcagtgctgttcgagatggaagcatggtctctcatcca
gctctgcctggactggaggaggatatgcttgatatcttcattcagcagtgccatttcctg
cgccaggctggtcactcagaaaaggcaacatctctatttcaggccatgatagaatttact
tttttgaaacctgagagtctacaaaaactatccaccaaacagcaggtggaattttttgag
accttctgggacagtggtgaggcgagggttggagagcctggatcaaaagggtggaaaaca
tggatgcttcaacaagagcgaggtggttgggtacagccaagtgcagaagaagaggaggat
gaagacgaagaagaggaggaggtgaaggatcagaaccagcccagatggaaagtctggcta
gatgtggagtcatctcgtgaagcagggcattggttaccttggagacctgacaaatccaag
ggccaaacagaggatgactgtgaagaccctgaccgacaggttctgtttgatgacattggt
cagtctatgatttgtttatcatcgccagatttacagcttcgtcttcttctccactttttg
tcatttctgggattaccagtgaatattaccacatcaaaccaaactggaatgctgctggaa
aatcttttgttactgactcaaaatgataactttgcccgacctctgacatttcctgagctt
cttcacactgggatgaactctgttgggcagatgactactctccagggaatgccaaagtgc
atagggttgggaaaacagggtggaaagtttttaaataacattattgccatgattcagcct
ttacttcctactcaccatcgagccatcctgtttcttagccaaattcagaatgagaaactg
aaggttctgcagagtgcatgcagtagcaacaaaaaacatatccactcacaaggcaagaaa
agcaaacgcattgcaaagcgcttactgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnntggcgcgagtatgctcacctggagtggcttttaggaaatcttgat
gaagctcggaaggtttttgtcacagcagcagcactcggaggaaccagtggccttgcgtct
caaagtctgtgtaatctgacattattatgggcacaattagagactgaaaatgcattagat
attggtggaagacagaaagatataacttcctctccagctgtgcgtattctaacacgactt
gctgaaggaacctcattgtcctcttccgaacagctctctcctgtttccatattaaaagct
cggaaatcatatgaccaagctctgaactgcactttatctacattggatcaggtctccctt
aaacaacacgacaaaggtcaatcatacaggggcctggttggctgctacgctctcttccaa
tacctcacagtagggatcaaaccggcctctgatgtgtatgcactagcaagaaaccgaatg
gacgagctgcagcaaaggctaacaggggaccttaaaagtagcgaagctggttacaaagat
ttaatttctaatttatcttctgagtgtgaagctttagccattcagcaagcagcattgctt
aggtatcacaacaaagtgagtgtatttcctctagctcagctacgacagatgttaacagct
gccttgtctacctggccttactgtcctgccctttggggcatctacattcaggtggagaac
cgttatcatagtgctggccgagctcgtcgcttttttcattctataatgaggaatgccact
aatgtgttgccaggtctctttgccattgtcgctgagcaacaaaggaagcagactgtggat
gctgctcagagatcatgttgccatggaagtgccttgcctaccttaccagagaacggcctg
ggtcacaggatccgtggattatttgaaaatgcgactaaaacaaagatgggagctcattgt
cctctactttggagaatgtatatgtatttcttggtatcagatgggaaggtggataaagcc
aaagaaattttctataaagctctacaaaatgttccctggacaaagggcctttatatggat
gctattcaactatttcctgagcatttgcaagaatttgtggacttgatgacagaaaaagaa
cttcgactgagactaccactagaagagcttgatatacttctcgaggactaa
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