Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110155290
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Entry
110155290 CDS
T05002
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03015
mRNA surveillance pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110155290
09123 Folding, sorting and degradation
03018 RNA degradation
110155290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110155290
03041 Spliceosome [BR:
bpec03041
]
110155290
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110155290
mRNA cycle factors
Stress granule specific factors
110155290
Spliceosome [BR:
bpec03041
]
Complex C
Other components
Complex C specific factors
110155290
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
ApbA_C
Motif
Other DBs
NCBI-GeneID:
110155290
NCBI-ProteinID:
XP_020775035
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MNTATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDDRLKELFDKYGKTLSVKVMTDPSGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQXXXXXXXXXXMPANAIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPNSLRQPGPRANLRHMSPGSSGQGPRATGQ
AMATRPSVGVAGPRAIPPYKYATGVRNPNPQVVQPIPLQQPQPAVHVQGQEPLTASMLAA
APPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVA
VLQAHQAKKDATQKVGGMAPSASAPSS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagctacgggaagttatccaatggcttctctttacgttggcgacctgcacccc
gacatcaccgaggcgatgttgtatgagaaattcagcccggccggacccgtgctctccatt
cgggtctgcagagacatgatcacccgcagatccctgggatatgcatatgtcaacttctct
cagcctgcagacgccgagagagctctggacaccatgaactttgacgttgtaaaaggaaag
ccaatcagaatcatgtggtcccaaagagacccctccctcaggaaatctggagtgggcaac
gtgtttatcaaaaaccttgacaagtcgattgacaacaaagccctgtacgacaccttctct
gcttttggaaacattctctcctgcaaggtggtgtgtgatgagaacggctccaaaggttat
gcgtttgttcattttgagacgcaggatgcagctgacagagccattgagaagatgaatggc
atgctcctgaatgaccgcaaggtgtttgtgggtcgtttcaaatccagaaaagaacgagaa
gctgaacttggagccaaagccaaagagtttaccaatgtgtacattaaaaactttggggac
gacatggatgatgacagactcaaagagctctttgataaatatggtaaaacactcagtgtc
aaagtaatgaccgatccgtctggcaaatccagaggctttggctttgtcagttatgagaaa
catgaggatgccaacaaggctgttgaagacatgaatggcaccgagctcaacggcaaaact
gtgtttgtgggtcgcgctcagaagaagatggagaggcaggcagaactgaagagaaaattt
gagatgctgaagcaagagcggattagccgatatcagggagtaaacctttacatcaaaaac
ctggatgacacaatagatgatgaaaaattgcgcaaggaattttctccttttggatccatc
acaagtgcaaaggtgatgctggaggagggacgctcaaaaggtttcggctttgtctgcttc
tcctccccggaggaggccactaaagcggtgacagaaatgaatggacgtatagtaggctct
aaacctctgtatgtggccctggcccagcgtaaagaagaacgcaaagcccatctcactaat
cagnnnnnnnnnnnnnnnnnnnnnnnnnnnnncatgcccgctaatgccatcattaaccag
ttccagccgaccagtggctacttcatgccagctgtgccacaggcccagaatcgaaccaca
tactatgcgcccaatcagctggctcaaatgagacctaaccctcggtggcagcagcagggt
ggtagaggtcaaggtgggttccagggcattccaaactctctgcgtcagccaggaccacga
gctaacctcagacacatgagtcctggtagcagcggccagggcccaagagccaccggccag
gcaatggctactcgcccttcagtgggggttgctggtcctagagcaattcctccatacaag
tatgctactggtgttcgtaatcctaacccacaggttgttcagccgattccattgcagcag
cctcaacctgctgtgcacgtccagggccaggagcctctcaccgcttctatgctggcagct
gcacctccacaggagcaaaagcagatgctaggagagcgcctttttccactgattcaggcc
atgcatgccaacctggctggaaagatcactggcatgttgctggagattgacaactctgag
ctgctacatatgctggagtctcatgaatctctgcgttcaaaggtggaggaagctgtggcc
gtcctgcaggcacaccaggccaagaaagatgccactcagaaagttggtggcatggctcct
tctgcctctgctccctcctcctaa
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