Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110156005
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Entry
110156005 CDS
T05002
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03015
mRNA surveillance pathway
bpec03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110156005 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110156005 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110156005 (cpsf6)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
110156005 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
110156005
NCBI-ProteinID:
XP_020775846
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MKMADGVDHIDIYADVEEEEFNQEAEYPVHEQIDLYDDVISPSANNGDAPEDRDYLDSAP
GGTEGGKSAPANAAYNYSGKRIALYIGNLTWWTTDEDLTEAIRSIGITDVLEIKFFENRA
NGQSKGFALVCVGSEGSSRKLMDLLAKRELHGQNPIVTPCNKQSLSQFEMQSRKSSGTSS
GQMSGEGKAGPPGGSRGGFPMGGRGGRGRYPGPPGPGDRFPGPPGPGGPPPHFPGGMQGP
PRPPPGPPVHPGPPGPPPPGQGLPPPLAGPPGRGDRPPPPVLFPGQFGQPPLGPLPPGPP
PPGYGPPPGPPPPQQGPPPPGPFPPRPPGPIGPPMALGPPPHMPGPPPGGPPPAPHVNPA
FFPPPGNSMPPNDRGPPGPNDPYGRPPPYERDFGHGGRDMDSSRAPLSEAEFEEIMNRNR
AISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIES
KSYGSARERSRERDHSRSREKSRRHKSRSRERDRHEDYYRERSRERDRHRERDRDRDRER
EREYRHR
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatggcggacggtgtggatcacatcgacatctacgccgatgtagaggaggaggaa
tttaaccaggaggctgaatacccggtgcatgagcagatagacctgtacgatgatgttatt
tctccatcggccaataatggagacgccccagaagaccgggattacctggactcggcacca
gggggcactgagggagggaaaagtgccccagccaatgcagcgtacaactactccggcaaa
aggatcgctctgtacataggaaacctcacatggtggaccacagatgaagacctcactgaa
gcaatccggtcgattggcatcacagatgtgctggaaataaagttttttgaaaacagagca
aatggccagtccaaagggtttgctttggtttgtgtcggctctgaggggtcctccaggaag
ttgatggacttattggcaaagcgtgagcttcatggtcagaatcctatcgtcacgccgtgc
aacaagcagtccctgagccagtttgagatgcagtctcgtaaaagctcaggcacatcttca
ggacagatgtctggagaaggtaaggccggccctcccggcggctctcgtggaggattccca
atgggcgggagaggaggcaggggcagataccctggaccccccggacctggggatcgcttc
cctggccctcctggccccgggggaccaccaccacacttcccaggtggaatgcagggtcct
ccacggcctcctcctggaccccctgttcatcctgggccccctggcccccctcctccaggt
caaggtctgccccctcccctcgccggacccccaggccgtggggacagacctcctccgcca
gtgcttttccctggtcagtttgggcagcctcctctggggcctctgcctcctggaccccct
cctccaggatacggccctccgcctggaccccctcctcctcagcagggacccccacctccg
ggcccattccccccacgtccccctggtcccatcggccctcccatggctttaggaccccct
ccgcacatgcccggaccccctccaggaggacccccacctgccccacacgtgaacccggcc
ttcttccccccgcccggcaacagcatgccccccaacgacagaggccccccgggacctaat
gacccgtatgggcgtccgccgccgtatgaacgagactttggacacggaggacgggacatg
gattcctctcgggcccctctaagcgaggcagagtttgaggagatcatgaacagaaacaga
gccatctcctctagtgccatctccagggcagtgtctgacgccagcgcagcggactacggc
agtgccatcgagaccctggtgacggccatctctctgatcaaacagtcgaaggtctctgca
gacgaccgctgtaaagtgctcatcagctccctgcaggactgtctccacggcattgagtcc
aagagttacggctcagccagagagcgctccagagaacgcgatcacagtcggtcgagagaa
aagagccggcgccacaagtctcggagccgtgaacgagatcgtcacgaggattattacaga
gagaggagccgagaaagggaccggcatcgcgagagagaccgggacagagacagggagcgt
gagagggagtacaggcaccgctaa
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