Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110157399
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Entry
110157399 CDS
T05002
Symbol
skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110157399 (skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110157399 (skiv2l2)
03041 Spliceosome [BR:
bpec03041
]
110157399 (skiv2l2)
03009 Ribosome biogenesis [BR:
bpec03009
]
110157399 (skiv2l2)
03016 Transfer RNA biogenesis [BR:
bpec03016
]
110157399 (skiv2l2)
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110157399 (skiv2l2)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110157399 (skiv2l2)
Spliceosome [BR:
bpec03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110157399 (skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
110157399 (skiv2l2)
Ribosome biogenesis [BR:
bpec03009
]
Eukaryotic type
Pre-60S particles
Helicases
110157399 (skiv2l2)
Transfer RNA biogenesis [BR:
bpec03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110157399 (skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110157399
NCBI-ProteinID:
XP_020777394
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MADAFGDGLFSVFDDEQQTNASKKTHLSTAPEIGKSSNKLGSENDAGPSGRGKRGGDSDC
ADEVLFGKKPRHETVSSNELNLAELMPQVKVEQVETVEGCSHEVALPASDEYKPLRPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVV
FDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVYTD
YRPTPLQHYVFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSGGGGKWDPRGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNKDEEKRLVEEVFN
NAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSP
AVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKM
TKLEEQYHAIEIPNEEGVVTYFKIRQQLAKLGKEIQEFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFCKKSNTKSTAESEPLYVVEVLLHCSKDSVKDAATEAAKPAAQGETGEM
QVVPVMLQLLTSISSVRLYIPKDLRPFDNRQLMLKSIQEVQKRFPDGVPLLDPIDDMGIK
DPALKKVIQKVEAFEHRMYSHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVL
QMDQLKCRKRVLRRLGFASPSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLSVEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLEVDEETYMNQFKPHL
MDVVYAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagatgggcttttcagcgtgtttgacgatgaacaacaaacaaat
gccagcaaaaagactcatttatcaacagctcctgaaatcggaaaatcgtcaaacaaactt
ggttcagaaaatgatgcaggtccgtccgggaggggaaagaggggaggcgatagtgactgc
gcagatgaagtgttgtttgggaagaaaccacgccatgaaacagtttcttccaatgaactc
aatcttgctgaacttatgcctcaggtgaaggtggaacaagttgagactgttgaaggatgc
tctcatgaggttgctcttcctgccagtgatgaatataagcccctaaggcctagagttgga
aaagctgcaaaggaataccccttcatacttgaccccttccaacgtgaggctattctttgt
atagacaataaccagtctgtccttgtgtctgctcatacctctgctggaaagactgtctgt
gctgagtatgctattgcactagcgcttagagaaaaacagagggtcatcttcacaagtccc
atcaaagccttgtccaaccagaaatacagagaaatgtatgaagaatttcaggatgtagga
ttgatgactggtgacgtcacaatcaaccccactgcctcctgtcttgtaatgacaacagag
attttgagaagcatgttgtacaggggttctgagattatgagggaagttgcttgggtagtc
tttgatgagatccactacatgagagattcagaacgtggcgttgtgtgggaagaaactata
attcttctaccagacaatgtgcattatgtgttcttgtcagccacaattcctaatgccaga
cagtttgctgaatggatttgctacttacataagcagccatgccatgtagtgtatactgat
taccgtcccactccactgcagcattatgtctttccagcaggaggcgatgggctccacctt
gtagttgatgagaatggtgacttcagggaagataattttaacacagcaatgcaggttctg
cgtgatgctggagattcaggcagtggtggaggaggcaagtgggaccccagaggacgcaaa
ggaggaactaaaggaccatccagcgtatttaaaatagtgaaaatgatcatggagagaaac
tttcagcctgtcatcatttttagtttcagcaaaaaagagtgtgaggcttatgctttacaa
gtagcaaagctggactttaataaagatgaggagaaacgtctggtggaggaagtgtttaat
aatgcaatagactgtctgtctgatgaggacaagaaactccctcaggtggaacatgtgctg
cccctgttgaagagaggcattggaattcatcacggtggactgctgcctattctcaaagaa
actatagagatccttttttctgaaggtcttctcaaggccctgtttgccacagaaacgttt
gctatgggcatcaacatgccagctcgaactgtgttgtttacaagtgcacggaaatttgat
ggcaaaaatcatcgttttattacatcaggagaatatatccagatgtctggtcgcgctgga
agaagaggaatggacgaaagaggaattgttatatttatggtagacgagaagatgagtcca
gctgtgggcaaacaactacttaagggctcggcagaccctttgaacagtgccttccacctg
acttataacatggttctgaaccttctgcgtgtggaggagatcaacccagagtacatgctg
gagaagtccttctaccagttccaacactacagagctttgcctggtgttgtcgaaaaaatg
acaaagctggaagaacaataccatgccattgagattcccaatgaagagggcgttgttact
tactttaagatcagacaacagctggccaaattgggtaaagaaatccaagagttcatccat
aaacctaaatactgcctgcccttcttgcagcctggccgtctagtcaaagtgaaaaatgaa
gatgctgattttggttggggagttgttgttaacttctgcaagaaatctaacacaaagtca
actgcagaatcagagcctttgtatgtggtggaagttttgctgcactgtagtaaggacagc
gtcaaagatgctgcaacggaagcggccaaacctgctgcccagggtgagaccggggagatg
caggtggtgccagtgatgcttcaacttcttacatctatcagctctgtgcgactttacatc
cctaaagatttaaggccttttgacaacaggcaacttatgctcaagtccatacaggaggtc
cagaagcgtttcccagatggtgttcctttgctagatccaatagatgacatgggcattaag
gaccctgctttaaagaaagtgatacaaaaagtggaggcttttgagcaccgtatgtactcc
cacccactacacagtgaccccaacctggagtcagtctactctctgtgtgagaaaaaggct
ctgattgcagcagacgttcggacggccaagcgagagttgaaaaaggctcgcactgttctg
cagatggaccagcttaagtgcagaaaaagggtcctgagacgacttggttttgccagtcct
tctgatgtcatagagatgaagggaagggtcgcttgtgaaattagcagtgccgatgagctc
cttttgactgagatggtgttcaacggacttttcaatgacctatctgtggaacaagccact
gcgctgttgtcctgctttgtattccaagaaaatgccagtgagatgccaaaattaacagaa
cagctggctgcccctctgcgacaaatgcaggagtgtgcaaaacgtatagctaaggtgtct
gctgatgctaagctagaggtggatgaggagacctacatgaaccagttcaaaccgcacctg
atggatgttgtgtatgcttgggccaatggggcgacctttgcacagatctgcaagatgact
gatgtttttgagggaagcatcattcgctgcatgcgccgtttggaggaggtactaagacaa
atgtgttctgctgcaaaagccattggcaacacagaactggaaaacaaatttgcagaaggg
ataacgaagatcaaaagagacattgtctttgctgcaagtctttatctataa
DBGET
integrated database retrieval system
