KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110157420
Entry
110157420         CDS       T05002                                 
Symbol
vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03250  Viral life cycle - HIV-1
bpec04144  Endocytosis
bpec04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    110157420 (vps4b)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    110157420 (vps4b)
  09143 Cell growth and death
   04217 Necroptosis
    110157420 (vps4b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bpec04131]
    110157420 (vps4b)
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110157420 (vps4b)
Membrane trafficking [BR:bpec04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    110157420 (vps4b)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    110157420 (vps4b)
SSDB
Motif
Pfam: MIT AAA Vps4_C AAA_lid_3 TIP49 AAA_16 AAA_5 AAA_14 AAA_22 RuvB_N IstB_IS21 AAA_18 DUF815 AAA_2 AAA_33 nSTAND3 TPR_1 AAA_17 RNA_helicase TPR_11 AAA_24 TPR_12 PhoH IFT20 Mg_chelatase TPR_2 AAA_7 SpoIISA_toxin Parvo_NS1 AAA_28 DUF5906 RhoGEF bpMoxR ResIII NACHT TPR_8
Other DBs
NCBI-GeneID: 110157420
NCBI-ProteinID: XP_020777419
LinkDB
Position
Unknown
AA seq 508 aa
MEPTNLQKAIAIAQKASQEDQTGNYEEAIRSYQHAVKIFLHILKREPQGKDGNQKIRDSC
KKYLDRVEELQAYLDNKQKAIDLASKAAQEDKAQNFEEALRLYQAAVQYFLHVVKYEAQG
DKAKQSIRAKCAEYLDRAEKLKEYLKKKEKAPPSKPVKESGSEDKGNESDEGDDPEKKKF
QNQLSGAIVMEKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPP
GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFCLAREHKPSIIFIDEI
DSLCGSRSENESEAARRIKTEFLVQMQGVGNNNDGVLVLGATNIPWTLDSAIRRRFEKRI
YIPLPEEHARSFMFKLHLGATPNSLSDSDFVTLGKKTDGYSGADISIIVRDALMQPVRKV
QSATHFKRVRGPSRNDPNILMDDLLTPCSPGDPNAIEMTWMEVPGEKLLEPVVSMPDMLR
SLSNTKPTVNDQDLEKLKKFTEDFGQEG
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggagccaacgaacctacagaaagcgattgcaattgctcagaaggcttcacaggaagac
cagactggaaactatgaagaagctattaggtcctatcaacatgcagtcaagatctttctg
cacattctgaaacgtgagccccagggcaaggatggaaaccagaagataagagacagctgt
aagaaatacctggacagagtggaagaactgcaggcctacttagataataaacagaaagct
attgatcttgccagcaaagcagcccaggaggacaaagcacaaaacttcgaagaggctcta
cgattgtatcaggccgctgtccagtacttccttcatgttgtaaaatatgaagctcaggga
gacaaagcgaaacagagtatacgagcaaaatgtgctgaatacctggacagagctgagaag
ttgaaggaatatctaaagaagaaagaaaaagctcctccctccaagcccgttaaagaatct
gggagtgaagacaaaggaaatgaaagtgatgaaggtgatgatccagagaaaaagaagttc
caaaatcagctctcaggtgcaattgttatggagaaaccaaacattaaatggaatgatgtt
gctggtcttgaaggagcaaaagaagctttaaaagaagctgttattcttccaatcaaattc
ccccacctttttacaggtaagagaactccttggagagggattttgctctttggacctcca
ggaacaggaaagtcatatttggcgaaagccgtagctacagaggcaaacaattcaaccttc
ttctccatctcctcatctgacctcgtctctaagtggcttggggagagtgaaaagctggta
aaaaatcttttttgcctggcacgagaacacaaaccttcaatcattttcattgatgaaatt
gactctctctgtggctcccgaagtgaaaatgagagcgaggctgcccgtcgtataaagaca
gaatttttggtgcagatgcaaggagtgggcaataataatgatggagtgttagtacttgga
gcaacaaacataccctggactttagattcagctattcgaagaagatttgaaaagaggatt
tacatcccgctgcctgaagagcatgcccgctcctttatgttcaagctccatttgggggcc
actcccaacagtctttcagactcagactttgtaactctgggcaagaagacagatggttac
tctggggcagatatcagcattattgttcgagatgctttgatgcagccagttcgaaaggtc
caatctgcaacccacttcaaaagggtaagagggccatcaaggaatgatccaaacatactt
atggatgaccttttgacaccttgttcacctggcgatcccaacgctattgaaatgacatgg
atggaggtgccaggagagaagcttttggagccagtggtgtccatgcctgacatgctgaga
tctctgtccaatacgaagccaactgtaaatgatcaagacctggagaagctgaaaaagttc
acagaggattttggtcaggagggctaa

DBGET integrated database retrieval system