KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110158531
Entry
110158531         CDS       T05002                                 
Symbol
rfc3
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03030  DNA replication
bpec03410  Base excision repair
bpec03420  Nucleotide excision repair
bpec03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110158531 (rfc3)
   03410 Base excision repair
    110158531 (rfc3)
   03420 Nucleotide excision repair
    110158531 (rfc3)
   03430 Mismatch repair
    110158531 (rfc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bpec03032]
    110158531 (rfc3)
   03036 Chromosome and associated proteins [BR:bpec03036]
    110158531 (rfc3)
   03400 DNA repair and recombination proteins [BR:bpec03400]
    110158531 (rfc3)
DNA replication proteins [BR:bpec03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    110158531 (rfc3)
  DNA Replication Termination Factors
   ELG1-RFC complex
    110158531 (rfc3)
Chromosome and associated proteins [BR:bpec03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    110158531 (rfc3)
DNA repair and recombination proteins [BR:bpec03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     110158531 (rfc3)
  Check point factors
   HRAD17(Rad24)-RFC complex
    110158531 (rfc3)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA_lid_RFC1 AAA AAA_22 AAA_16 nSTAND6 AAA_11 T2SSE Sigma54_activ_2 T4SS-DNA_transf ABC_tran
Other DBs
NCBI-GeneID: 110158531
NCBI-ProteinID: XP_020778696
LinkDB
Position
Unknown
AA seq 356 aa
MSLWVDKYRPNSLAKLDYHKEQAAQLKNLVQCGDFPHLLVYGPSGSGKKTRIMCLLKELY
GAGVEKLRIEHQSIVAPSKKKIEINTIASNYHLEVNPSDAGNQDRVVIQELIKTVAQSQQ
IQSSTQRDFKVVLLTEVDRLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIGPIRSRCL
AVRVPLPSAEEVCSVLGAVCKKEGLLLPPELAKQISEKSGRNLRKALLMCEACRVQQYPF
SADQEVPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPDVIMKGLVNELL
SNCDGHLKTEVAHMAAQYEHRLQLGSKAIFHLEAFVAKFMAIYKKFMEDGLDAMMF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagtttgtgggtggataaatacagacccaactcccttgccaaactggactatcacaaa
gagcaagccgcgcagctgaaaaacctggtccaatgtggcgacttcccacatttgttagtg
tatggcccttcggggtctggaaagaaaacccgcattatgtgtttgctgaaggagctgtat
ggagctggagtggagaaattgcgaatcgagcatcaaagtattgtggcgccatcaaagaag
aaaattgaaatcaatactatagcaagcaattatcacttggaagttaatcccagtgatgca
ggaaatcaggaccgtgtggtcattcaagagctaattaaaacagtagctcaatctcaacaa
atccagtcaagcacccagagagacttcaaagtggtcctactaactgaggtggacaggctc
accaaagatgctcagcatgctttgcgtcgtaccatggagaaatacatgtccacctgccgt
ctcatcctgtgctgtaattccacctccaaagttattggaccaatcagaagtcgatgtctg
gctgtcagagtgcctcttccaagcgcagaagaagtgtgtagtgttttgggtgctgtgtgc
aaaaaagaggggctcctccttcctcctgagttggcaaaacaaatctctgaaaagtccggt
cgtaatctccgcaaagctcttttgatgtgtgaagcctgcagagtacagcagtacccattc
tcagcagaccaggaagtgccagagacagactgggaggtttacctgagggagactgccaat
gcaattgtgagccagcaaagtccacaaagattgctggaggtgcgtgccagattatatgag
ctcttgactcactgcatcccacctgatgtgattatgaagggtcttgtaaatgaactgctg
agcaactgtgatggtcatctgaaaacagaagtggctcatatggcagcgcagtatgaacac
aggctgcagctgggaagcaaagccatctttcaccttgaggctttcgttgccaagtttatg
gccatttacaagaaatttatggaggatggactggatgctatgatgttttaa

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