Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110159458
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Entry
110159458 CDS
T05002
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03020
RNA polymerase
bpec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110159458 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
110159458 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpec03021
]
110159458 (polr2a)
03400 DNA repair and recombination proteins [BR:
bpec03400
]
110159458 (polr2a)
Enzymes [BR:
bpec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110159458 (polr2a)
Transcription machinery [BR:
bpec03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110159458 (polr2a)
DNA repair and recombination proteins [BR:
bpec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110159458 (polr2a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
110159458
NCBI-ProteinID:
XP_020779675
LinkDB
All DBs
Position
Unknown
AA seq
1664 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDAN
NPKIKDILAKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATVKPSHKAFEKKFRFDCTNERALRRTLQEDIVKDVLTNAHVQSALEREFEKMRED
RDVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLHPLRVVDGLKDLSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSRRMTEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQDDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGEVDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSGASDASGYSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcatcatcagcccagatgagcttaaacggatgtcagttacagaagggggaattaag
taccccgaaacaacagaaggtgggcgccctaaacttggtggccttatggaccccaggcaa
ggtgttattgaacggagtgggagatgtcagacttgtgcagggaacatgacagaatgtcca
ggccactttggacatatagaattggccaaaccagtttttcatgttggctttgtaacaaag
ataatgaaggttttacgctgtgtctgtttcttttgctcaaagctgttagtggatgcaaac
aatccaaagatcaaagacattcttgccaagtctaaagggcaacccagaaaacgactgaca
cacgtttatgaactctgcaaaggcaaaaatatctgtgaaggtggagaggagatggacaac
aagtttgggatggagcagcaggagactgaagaggacattactaaggaaaagggtcatggg
ggctgtgggcgttaccagccacgcatcaggcgatctggtctggagctgtatgctgagtgg
aagcacgtgaatgaagattctcaggagaaaaaaatccttcttagtccagagcgtgtccat
gaaatcttcaaacgcatctcagatgaagaggacatcatcttgggtatggatccgaagttt
gctcgccctgaatggatgattgtgactgtgttgcctgtgcctccactggctgttcgtcct
gctgtggtcatgcagggttccgcacgcaaccaggatgatttgactcataaactggctgat
attgtcaaaattaataatcagcttagaagaaatgagcagagtggtgctgcagctcatgtt
attgctgaggatgttaaacttctccaattccatgtagccaccatggtggacaatgagctc
ccaggactgcccagggcaatgcaaaaatctggtcgccctctaaaatccatcaagcagcgt
ctaaagggaaaggaaggaagagtccgaggtaatcttatgggcaagcgtgtggacttctct
gctcgaactgttattacacctgatcccaatctgcaaattgaccaagtcggtgtcccaaga
tctatagcagccaacatgacttttcctgaaattgttactcccttcaacattgacagatta
caagagctggtgcgaagaggaaacagtcagtacccaggagccaaatacataattcgagac
aatggagacagaattgatttgcgatttcacccaaaaccaagtgaccttcatttgcagatt
ggctataaggttgaaagacacatgtgcgatggagacattgtcatctttaatcgtcagcct
acacttcacaaaatgtccatgatggggcacagagtacgaattcttccgtggtcaacattt
cgactaaatctcagtgtcaccacaccatataatgccgattttgatggtgatgagatgaac
ttgcacctgccccagtctctggagacaagagcagagatccaggagctggccatggtgccc
cgtatgattgtgacacctcagtccaacagacccgtcatgggtattgtgcaggacacactc
acagcagtgcgcaaatttaccaaaagagatgtcttcttagagcggggtgaagtcatgaac
cttctcatgttcttgtccacctgggatggtaaaatgccccagcctgccattctcaaacct
cgtcctctgtggacaggaaagcagatcttcagccttatcattcctggacacatcaatgtc
atccgtacacacagcactcatccagatgatgaagatagtggtccatacaagcacatttca
cctggtgacaccaaggttattgtggagaacggcgagttgataatgggaattctttgcaag
aaatccttgggaacttcagctggttctctcgtccacatctcatatctggagatgggtcat
gatattaccagactgttctactccaacattcaaactgtggtcaacaattggcttctgatt
gagggtcattcaatcggtattggtgactccattgctgatgcaaagacatatcttgacatt
cagaatacaatcaagaaagccaaacaggacgtgatagaagttattgaaaaagctcacaat
aacgaactggaaccaactcctggtaacacactaaggcagacgtttgagaaccaggtgaat
cgtattctcaacgatgctcgagacaaaactggatcctctgcccagaagtcattgtctgag
tacaacaacttcaagtccatggtggtggcaggttcaaagggttccaaaattaacatctca
caggttattgctgtggtgggacaacagaacgtggagggtaaacgaatccccttcggcttc
aaacaccgcacactgccccactttattaaggatgattatggtcctgagagcagaggcttt
gtagagaactcatacctggctggactgacaccaactgagtttttcttccacgccatggga
ggaagagagggtctgatcgacacagctgtcaaaacagctgagacaggttacatccagcgt
cgtctgatcaaatctatggagtcggtcatggtaaagtacgacggcactgtcagaaattca
atcaaccaagtggtacagctgcgttatggtgaggacggactggctggagagaatgtggag
tttcaaaacttagcaacagttaagccctcacacaaagcctttgaaaagaagttcagattt
gattgtaccaatgagcgagcactgaggcggacactacaggaagatattgtaaaagatgtg
ttgaccaatgcccatgttcagagtgccttggaaagagagtttgaaaagatgagagaagat
cgcgatgtcctcagagccattttccctactggtgacagcaaggtggtccttccttgcaat
ttggctagaatgatctggaatgctcagaagatctttcgtattaacacacgaaccccaaca
gatctacatccattgagagtggttgacgggctgaaggatctcagtaagaagctgatcatt
gtaaacggcgatgaccctctgagcagacaggcccaagaaaatgccactctgctttttaac
atccacctgcgctccaccctctgctcccggcgaatgacagaggagttccgtctctccacc
gaggctttcgattggctgctgggagagatcgagaccaaattcaaccagtcaatcgctcat
cccggagagatggttggtgccctggctgctcagtctttgggagagcctgccactcagatg
acactgaacactttccattacgctggtgtgtccgccaagaacgtaactctgggtgtgcct
cgtttaaaagagttgatcaacatctcgaagaggcccaagactccttcactgactgtgttc
ctgttgggacaagcagcaagagatgctgagcgcgccaaggacattctttgcagactagag
cacacaacacttagaaaggtgactgcaaatactgccatctactatgaccccaaccctcag
aacacggtggtggcagaggaccaggagtgggtgaacgtgtattatgagatgcccgacttt
gatgtgactcgtatttcaccatggctgctgcgcattgagctcgatcgcaaacacatgact
gatcgcaagctgaccatggagcagatcgcagaaaagatcaatgcaggttttggagatgat
ttgaactgtatcttcaatgacgacaatgctgagaagttggtgttgcgaataagaattatg
aacagcgatgaaaacaagttccaagacgatgaggaggtggtggataaaatggatgatgat
gtttttctgagatgcattgagtccaacatgctgacggacatgactcttcagggaattgaa
cagatcagcaaggtgtacatgcatctgcctcagacagacaacaagaagaagatcatcatc
acagaggacggagagttcaaggccctgcaggagtggatcctagagacagacggcgtgagt
ctgatgagagttctgagtgagaaggacgtagaccctgtcagaaccacctccaacgacatt
gtggagatctttacggttttgggaattgaagcagtgcgtaaggctctggagagagagttg
taccacgtcatctccttcgacggttcttatgtgaactatcgtcacttggctttgctttgt
gacaccatgacctgcagggggcatttaatggccatcacacgtcacggtatcaatcggcag
gacacaggcccactcatgaaatgctcttttgaggaaactgtggatgtgttgatggaggcc
tcgtctcatggtgaggtggatccaatgaagggtgtgtctgagaacatcatgcttggacag
cttgctccagcaggaacaggctgctttgacttgctgttggatgctgagaagtgcaaatat
ggcatggaaatccccacaaatatacctggcatcagtgtggctggacccactggaatgttc
tttggctcagtgcctagtccgatgagcggcatgtcacctgccatgaccccctggaacaca
ggagccaccccggcctatggagcctggtctcccagtgttggaagtggcatgactccagga
gcagcaggcttttcacccagtggagcgtctgatgccagtgggtactctcctgggtactcg
cccgcctggtcccccactccaggctctccagggtcaccaggccctgcaagcccgtacatt
ccttctccaggaggagccatgtctcccaattattctcccacttctcctgcctacgagcca
cgttctcctggtggatacacgcctcagagtccaggctattctccgacctctccctcctac
tccccaacttctccctcttactcccccacaagccccaactacagccccacatccccgtcc
tactcccccacttcccccagttactccccaacctctccctcgtattcacccacgtctccc
tcttactcccct
DBGET
integrated database retrieval system
