KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110160204
Entry
110160204         CDS       T05002                                 
Symbol
lsm7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018  RNA degradation
bpec03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110160204 (lsm7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110160204 (lsm7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpec03019]
    110160204 (lsm7)
   03041 Spliceosome [BR:bpec03041]
    110160204 (lsm7)
Messenger RNA biogenesis [BR:bpec03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110160204 (lsm7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     110160204 (lsm7)
Spliceosome [BR:bpec03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    110160204 (lsm7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 110160204
NCBI-ProteinID: XP_020780503
LinkDB
Position
Unknown
AA seq 103 aa
MADKEKKKKESIFDLSKYIDKPIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD
QLKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcggataaagagaaaaagaagaaagaaagcatttttgatttgtcaaaatacattgac
aaacccattcgtgtaaagtttcaaggaggaagagaagccagtggtgtcctgaaggggttt
gatccactgttaaacctggtgctggacggtaccatcgaatacatgcgtgatcccgatgac
cagttgaagctgacggaggatacgcggcaactggggctggtggtgtgcagagggacctct
gtggtgctcatctgccctcaggacggcatggaggcaatacccaatccgttcatacagcag
caggatggctga

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