Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110161872
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Entry
110161872 CDS
T05002
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03013
Nucleocytoplasmic transport
bpec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110161872 (upf2)
03015 mRNA surveillance pathway
110161872 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110161872 (upf2)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110161872 (upf2)
mRNA cycle factors
P-body specific factors
110161872 (upf2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
110161872
NCBI-ProteinID:
XP_020782367
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MPAEGKRVVNMDEKEFSYNNKDREGERRGAPREKTKEDTKMSAKKDSGKEEKRKRIEEEK
KKKEEKERKKKEEEKQKAEEELKKREEEEKRQQEEHKKKLQEEESKRQREEEAALVKEKE
ECHQLHQEAWERHQSRKELRSKNQSAQDGRPEEAFFSRLDSSLKKNTAFVKKLRTLTEQQ
RDSLSNDFASLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPLLLQSWK
KHFEARKEDKTPNVSKLRTDLRFIAELTIVGLFTDKEGLLLIYEQLKNIINTDRETHTHV
SVIISFCKHCGDDVAGLVPRKVKLAAEKYSLVFPPSEIISSEKQQPFQNLLREYFTSLAK
HLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADLLDENMP
ELPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVPAILFKD
NEKANQGKDKDDARDGRELKDATTAEELELELEALDIADEPLELEGPEETENEELAKKLM
DDQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKANRRKLVRAL
FTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQINIETKNKTVR
FIGELAKFKMFSKTDTLQCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPDSHLRTSVLL
EQMMRKKQAQHLDARYVTMVENAYYYCNPPPIEKAVKKKRPPLQEYIRKLLYKDLSKVTT
EKVLRQMRKLPWQDPEIKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDG
VLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFICFGVNQDGTSS
PLDPPDHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRYIWWKKSLDIWNKDHPF
PIDIDYMITDTLELLRPKMTLCSSLEEASKQVVDLEREVLVKLGMAMERDGRSSAMSEAD
ALDEEDDDDDEEGGAETEEQSGNESEMNEQEDDEGSDNDDEEHEEDDEENTDYQTDSNKE
TETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQ
LKSQLKKGGAGPPCIGEGASDISDTMQFVMLTRKGNKQQYKILNVPLSSHLAANHFNQQQ
AEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAQANTNRERRPRYQHPKGAPNADL
IFKTGGRRR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaaggtaagcgcgtagtgaacatggatgagaaagagttttcctacaataac
aaggatagagaaggagagagaagaggtgcacctcgagagaaaacaaaggaagacactaaa
atgagtgctaaaaaggacagtggcaaagaggagaaacgaaaacgcattgaagaggagaag
aagaagaaggaggaaaaagagcgtaagaaaaaggaggaggagaaacaaaaagctgaagag
gagttgaagaagagagaggaggaagaaaagagacagcaagaggagcacaagaagaagctc
caggaggaggaaagcaaacgacagcgtgaggaggaggcagcccttgtgaaggagaaggaa
gagtgtcaccaactacaccaggaagcctgggagcgacatcagagcaggaaggagttgcgc
agcaaaaatcaaagtgcccaagatggtcgtcctgaagaagcctttttcagtcggctggat
tctagtctcaaaaagaatacagcttttgtcaaaaaactgcggacacttactgaacagcaa
cgtgactcactctccaatgactttgcctctctcaaccttagcaaatatattggagaggct
gtgagctctgttgtagaggcaaaacttaagatttcagatgtgggctgtgctgttcatcta
tgctcactgtttcaccagcggtatgcagagtttgcaccattattgttgcagtcttggaaa
aagcactttgaggctagaaaagaggataagacacctaatgtcagtaagctgcgcacagac
ctgcgctttattgcagagctcaccattgttggactctttactgacaaggaaggccttttg
ctcatttatgaacaactgaaaaacatcataaacactgaccgggagactcacactcatgtg
tcagttatcataagcttctgcaaacattgtggagatgacgtagcaggtctagtaccacga
aaagttaaactggctgcagagaaatatagtttagtatttcctccaagtgagataatcagc
tcagaaaaacagcagccttttcaaaaccttttgcgggaatactttacatcacttgccaaa
cacctgaagaaggaccacagggaactacagaacattgagagacagaaccgacgaattttg
cattctaaaggagaactgagtgaggaccgacacaaacagtatgaggaatttgcaacttct
taccaaaagcttttggccaatactcaatctttagctgatctgcttgatgaaaatatgcca
gagttaccccaagacaagacagtgcaagaggagcatggccctgggattgacatttttact
cctggaaagcctggagagtatgaccttgaagggggaatatgggaggatgaagatgcccga
aacttttatgaaaacttggtggacctgaaggcatttgtcccagccatccttttcaaagac
aacgagaaggcaaaccagggaaaagacaaggatgatgccagggatggcagagagctaaag
gatgccaccactgcagaagagctggaactagaattggaggctttggacatcgcagatgaa
cctctcgaactggaagggcccgaagagacagaaaatgaagaattggccaaaaagctaatg
gatgaccaagaacaagaagacgaggaggcaaacactggctcacacttgaagctcattgta
gatgcatttatccaacagcttcccaactgtgtgaatagagacctcattgataaggctgcc
atggacttctgcatgaacatgaacaccaaagctaacaggaggaaattggtgcgagcttta
tttacagtccctcggcaaaggcttgatttactaccattttacgctcgcttggtggccact
cttcatccttgtatgtcagatgtggctgaagacctttgttccatgctaaagggcgacttc
aggtttcatattcgtaagaaggaccagataaatatcgaaactaaaaacaaaactgtcaga
ttcattggggaactggccaagttcaagatgttttcaaaaacagatacacttcagtgtctt
aagatgttgctttcagatttcactcatcatcacattgaaatggcatgcacactgttggag
acctgcgggcggttcctctttaggtcacctgactctcacctgcgcactagtgtccttttg
gaacaaatgatgcgcaagaagcaagctcagcacttggatgctcgttacgtaacaatggtg
gaaaatgcttactactactgtaaccctcctccaattgagaaagcagtgaaaaaaaagagg
cctccactgcaggaatacatccgcaagctactgtacaaggatttgtcaaaggtgaccact
gagaaagttttaaggcagatgcgaaagctgccctggcaggaccctgagatcaagagctac
ctgatctgctgcatggtgaacatttggaatgtcaaatacaacagtatccactgtgtggcc
aatctgctggcaggacttgtggcttaccaagaagatgtgggtatccatgtggtggatgga
gtcctggaggacattcgactgggaatggaggttaatcaaccaaagttcaatcagcgtcgc
attagcagtgccaagtttcttggtgaactctataactatcgcatggtggagtcagctgta
attttccgtaccctgttctccttcatatgcttcggagtaaatcaagatggtacatccagt
ccgttggaccctccagaccacctgttccgcatccgccttgtttgcacgttgcttgacacc
tgtggtcaatactttgatcgaggctccagcaaaaagaaattggactgtttcctcatatat
tttcagaggtacatttggtggaagaagagtctggacatttggaacaaagatcacccattt
cccattgacattgattacatgattactgatactctagaactgcttcggcccaaaatgacc
ctctgtagctccctggaagaggccagcaaacaggttgttgatctggaaagggaggtgctt
gtcaaactaggtatggccatggagagggatggtcgctctagcgccatgagtgaagccgat
gctcttgatgaagaagatgatgatgacgatgaagagggaggcgctgagacagaggagcag
tctggcaatgaaagtgaaatgaatgagcaggaagatgatgaagggtctgacaatgacgac
gaggaacatgaagaggatgatgaggagaatacagactaccagacagattccaacaaagaa
actgagactgatgaagagaacaatgaggtgaccatccgtggtggaggactaaaacatgtg
gcgtgtgctgaagatgaggacttcatacaggctctggataagatgatgctggagaacctt
caacagcgtagtggtgaggcagtgaaggtgcaccagttggatgtggccattcctctccag
ttgaagagccagttaaaaaaaggtggtgccgggcctccatgcatcggagagggagccagt
gacatatctgacaccatgcagtttgtcatgctcacgcgcaaaggcaataagcagcagtac
aagatactgaatgtacccctgtcatcacacctcgcggccaaccacttcaaccagcagcaa
gcagagcaagaggaacgcatgagaatgaagaaactcaccttggacattaatgaaagacag
gagcaggaggactaccaggaaatgatgcagtccttggctcagcgtccagcacaggcaaac
accaacagagagcgcaggcctcgctatcagcacccaaaaggggctcccaatgcagacctc
atcttcaaaacgggtggaaggagacgttga
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integrated database retrieval system
