Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110163562
Help
Entry
110163562 CDS
T05002
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110163562 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110163562 (ddx6)
03036 Chromosome and associated proteins [BR:
bpec03036
]
110163562 (ddx6)
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110163562 (ddx6)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110163562 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
110163562 (ddx6)
Chromosome and associated proteins [BR:
bpec03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110163562 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110163562
NCBI-ProteinID:
XP_020784204
LinkDB
All DBs
Position
Unknown
AA seq
476 aa
AA seq
DB search
MSTARTESPVILGLSNQNGQIRGSGKPGGGGGGGPQLNPIKGTINNGETLPATTTNAVIK
PGDDWKKNLKLPPKDMRMKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAFVIVPTRELALQVSQICIQV
SKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVNQVQMIVLDE
ADKLLSQDFVVMMEEILSFLPKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEELTLK
GVTQYYAYVTERQKVHCLNTLFTQLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAK
MRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGR
FGHLGLAINLITYDDRFNLKGIEEQLGTEIKPIPGIIDKSLYVAEYHSESHEEAKP
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgcaagaacagagagcccagtgattttgggcttgtccaaccagaatggacag
atccgaggctcagggaagccaggaggaggaggaggaggaggccctcagctaaatcctata
aaaggcacaattaacaacggagagactctgccagctactacaaccaatgctgttatcaaa
cctggggatgactggaagaagaatttgaaactacccccaaaggatatgagaatgaaaaca
tcggatgtcacagcaactaaaggcaatgaatttgaagactactgcctaaaacgagagcta
ctaatgggaatatttgaaatgggctgggagaaaccatctcctattcaggaggaaagcatc
cccattgcactgtcaggacgtgatattttagccagagccaaaaatggcacagggaagagt
ggagcctacctcattcccttacttgaacgcattgacctgaagaaggactgcatacaagcg
tttgtcatagtgcccactcgagaactggctctgcaagtaagccaaatatgtatccaggtc
agcaaacacatgggtggggtgaaggtgatggcaactacaggtggaacaaacctacgtgat
gatatcatgaggcttgatgaaacagtgcatgtggtgatcgccactcccgggcgaatctta
gacctcattaagaaaggagtggccaaagtcaatcaggtgcagatgatagtgctggatgaa
gcagacaaactgttgtcacaggactttgtggtaatgatggaggagatcctcagctttctt
cccaaacagagacagatcttactatattctgccactttcccactcagtgtgcagaagttc
atgaattcacatttacagaaaccctatgagatcaacctcatggaggagctcaccctgaag
ggagtgacccagtattacgcttatgtaactgaacggcaaaaagtccactgcctcaacact
ctttttactcagcttcagatcaaccagtctataattttttgcaattcctctcaaagagtt
gagctgcttgccaagaagatttctcagctgggctattcatgtttttacattcatgccaag
atgagacaggagcaccgcaatcgtgttttccatgacttcagaaatggcctgtgtcgtaat
ctagtgtgcactgatcttttcaccaggggaattgacattcaggctgtgaatgttgtcatt
aacttcgactttcccaagctgggagaaacatacctgcatcgtattggaagatctgggcgc
tttgggcatcttggtcttgcaatcaatctgatcacttacgatgatcgcttcaacctgaag
ggcattgaagagcagctcggaaccgaaatcaagcccatccctgggatcatcgacaagagc
ctttatgtggcagagtaccacagcgagagtcatgaagaggccaagccatga
DBGET
integrated database retrieval system
