Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110163620
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Entry
110163620 CDS
T05002
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03030
DNA replication
bpec03420
Nucleotide excision repair
bpec03430
Mismatch repair
bpec03440
Homologous recombination
bpec03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110163620 (rpa1)
03420 Nucleotide excision repair
110163620 (rpa1)
03430 Mismatch repair
110163620 (rpa1)
03440 Homologous recombination
110163620 (rpa1)
03460 Fanconi anemia pathway
110163620 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bpec03000
]
110163620 (rpa1)
03032 DNA replication proteins [BR:
bpec03032
]
110163620 (rpa1)
03400 DNA repair and recombination proteins [BR:
bpec03400
]
110163620 (rpa1)
Transcription factors [BR:
bpec03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110163620 (rpa1)
DNA replication proteins [BR:
bpec03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
110163620 (rpa1)
DNA repair and recombination proteins [BR:
bpec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
110163620 (rpa1)
MMR (mismatch excision repair)
110163620 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
110163620 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
RADX
A_deaminase
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
110163620
NCBI-ProteinID:
XP_020784275
LinkDB
All DBs
Position
Unknown
AA seq
602 aa
AA seq
DB search
MKLSEGAIEALANGHPISDVVLQLLNIRKIDGGSGPARFRAMMSDGRYSMTSFMLCTQLN
YMAEDNTLAPHCICLIKRHVTNILKDGRRVVIILEIEVVKSADQVGGKIGEPVPYTEGQK
PAAQQPPQSNPAPRAPLQPQNNNEVNRGFNRDMGKKPQFNMPSTPGGGSKVVPIASLNPY
QSKWTIRARVTNKSTIRTWSNSRGDGKLFSMEIVDESGEIRVTGFNQEVDKFFELIEVGK
VYYLSRASLKIANKQYTSVKNDYEMTLNGETTIIPCEDSCDVPMVQCDFVTIGELEMKEK
DSVVDVIGVCKSVEEVTRLTTKTNREVSKRTLDLMDMSGKVVTVTLWGEEAEKFDGTGQP
VVAIKGAKLSDFGGRSLSASFSSTLMVNPDIPEAYKLRGWYDKEGHAMDAQSLTEVRGGG
GGGGNTNWKSLSDVKTEHLGHGEKADYYTCIATIVYLRKENCLYQACPSQDCNKKVVDQQ
NGIFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQLKESN
EAAFDEVFQQANFNTFIFRSRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNIRKLG
SQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaagctctcagaaggcgcaatagaggctttagcaaacgggcacccaattagcgacgtt
gtgctgcagttattgaatattcgcaagatagacgggggaagtggccccgctcgttttagg
gccatgatgagcgatggtcgttactccatgacctcctttatgctttgcacccagctgaac
tacatggctgaggacaatacgctggccccacactgcatctgtctgatcaagaggcacgta
accaacatactgaaggatgggaggcgtgtcgtcattattttagaaatagaggttgtaaag
tcagcggatcaagttggtgggaagattggggagcctgttccttacactgaaggtcagaaa
ccagcagcacagcagccaccacagtcaaatccagcccctcgtgctccgctccaaccccag
aacaacaacgaagtcaacagaggtttcaatcgggacatgggaaagaagcctcaattcaac
atgcccagcacccccgggggcggctccaaagttgtacccattgccagtcttaacccgtac
cagtcaaagtggaccattcgcgctcgagttactaacaaaagtaccattcgaacctggagc
aattctcgtggagatggaaaactgttttctatggaaattgtggatgagagtggagaaata
agagtcactggcttcaaccaagaagtggacaagttctttgagctgattgaagttggcaag
gtttactacctctccagagcatcgttgaagattgctaacaaacagtacacatctgtaaag
aacgattatgagatgactcttaatggagagactaccatcatcccctgtgaagacagctgt
gatgtgcccatggtgcagtgtgactttgtcactattggagaattggaaatgaaagaaaag
gattcagttgtggatgtgattggtgtgtgtaagtctgttgaggaggtgactcgcctcacc
acaaaaacaaaccgtgaagtttccaaacgcactttagacctgatggacatgtctgggaag
gtggtgacagtcacactctggggagaggaggctgaaaaatttgatggcactggacaacct
gttgtggcgatcaagggtgcgaagctgtcagacttcgggggcaggtctctctctgcgtcc
ttcagcagcaccttgatggtcaacccagacatccccgaggcatacaagctccgaggctgg
tatgacaaggagggccatgccatggatgcacagtctttgacagaggtgaggggtggagga
ggaggaggagggaacactaactggaagtctctctcagatgtgaagacagaacaccttggg
catggggagaaggcggattactacacctgcattgcaactatagtgtacctgagaaaggaa
aattgcctttaccaagcctgccctagccaagactgcaataagaaagtggtggaccagcag
aatggcatattccgctgtgagaagtgtgacaaagagttccccaacttcaagtatcgcctc
atcctttctgcgaacattgcagactatggggacaaccagtgggtgacttgcttccaggaa
agtgcagaagccattttgggccagaatgcggcttacctggggcagctcaaggaatcgaat
gaagctgcctttgacgaagtgtttcaacaagccaacttcaacacctttatcttccgcagt
agagtcaagctagaaacatataatgatgagtccaggatcaaagccactgtgatggaagtg
aagcctgtggatcacaaggagtacagcaagaggttgattatgaatatcagaaaactgggc
agccagtag
DBGET
integrated database retrieval system
