Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110163835
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Entry
110163835 CDS
T05002
Symbol
xrn2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03008
Ribosome biogenesis in eukaryotes
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110163835 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
110163835 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpec03021
]
110163835 (xrn2)
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110163835 (xrn2)
03009 Ribosome biogenesis [BR:
bpec03009
]
110163835 (xrn2)
03016 Transfer RNA biogenesis [BR:
bpec03016
]
110163835 (xrn2)
Transcription machinery [BR:
bpec03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110163835 (xrn2)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110163835 (xrn2)
Ribosome biogenesis [BR:
bpec03009
]
Eukaryotic type
Pre-60S particles
RNases
110163835 (xrn2)
Transfer RNA biogenesis [BR:
bpec03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110163835 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF6178
Motif
Other DBs
NCBI-GeneID:
110163835
NCBI-ProteinID:
XP_020784499
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGKEFNGVRIPVDTTRPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELAQEKSRMREEVIRGGGYLPPEEIKERFDSNCITPGTEFMDNLARCLRYYVAE
RLSNDPGWKNITVFLSDASVPGEGEHKIMDFIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNQPRPCALCGQMGHELKECTGTAREKQGQHDEFAGSMPVSQQE
FIFIRLSVLREYLSRELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVGIYKDVVHKTGGYLTESGFVNLERVELIMQAVGVAEDNIFRKRKEDDESFKRRMKE
KKKRMKAEQQRPAFLTTGQFAPQALGGRGRPEPVQNARHQAFSMRVQNMETHNRDAAQSL
KAMMRNGGNSSAGPSDPRGVKRKAEDSDSEPEPEDNVRLWEEGWKQRYYKTKFDVDATDD
EFRKKVVQSYVEGLCWVLRYYYQDXVSWKWYFPFHYAPFASDFKDIKDMFKEFEKETKPV
TPACTCLCLYPRPHLSVSVPSPVLCLYPHLSVSVPSPVFVLVFSGVALLPFVDERRLRAA
LADVYPDLTQEEVKRNSLGSDILFLGKSHPLFDFIHELYRTETAEPTDVPPELCHGILGK
LTLDQDPILPDKMVESPIPTLRDITQNFSIGVRFKDPEFDPGHVFKAVMLPGAKIPGKVL
KPEDFNSSGRQPWRPQLGFNPNRQQAHLGQSGHRALNHSLGRGGGGQYSNTPPPGNYQNY
RGPQQHYPPARQNSLLGAPPFQQQFHRPSHGGGAHVWDRANQNQHNAFQQNSMRGRSAGG
YQHQQTQQHQQPQHQQTQLQTYQQQHQHQQQPYNQHQRRDERGARGAAGGQGYNSGRGGY
PAPPPSRRYNWN
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgatggctcagccgaaagtacccgtccatcatagtgcac
tgcgtggaggagaagggtaaggagttcaacggtgtgcggatccccgtggacacgacccga
ccgaaccccaacgaggtggagtttgataatctgtacctggacatgaacggaatcatccac
ccctgcacccaccccgaggacaaaccggcccctaagaatgaagacgagatgatggtggcg
atattcgagtacatcgaccgtctgttcaacatcgtgcggcccagacgagtgctctacatg
gccatcgacggagtggccccgcgagccaagatgaaccagcagaggtccagaaggttccga
gcgtccaaagagggagtggagctcgcccaagagaagagccgcatgagggaggaggtcatc
cggggaggaggttatcttcccccagaggagatcaaggagcgttttgacagtaactgcatc
actccgggcacagagttcatggataacttggctcgttgtcttcgttattacgtcgctgaa
cgtctcagcaacgaccccggatggaagaacatcacggtgttcctctcagacgccagtgtt
ccaggtgaaggagaacacaagatcatggacttcatccgcagacagagagctcagccaaac
cacgacccaaacacccaccactgtctctgcggcgccgacgctgacctgatcatgttgggg
ctggcgactcatgagccgaacttcaccatcatcagagaagagtttaaaccaaaccagccc
cgtccctgcgccctctgcgggcagatgggccacgagctcaaggagtgtacgggcaccgcc
agggagaaacagggacagcacgatgagttcgccggctcgatgcccgtgtcccagcaggag
ttcatcttcatccgcctgagcgtcctgcgagagtacctgtcccgggagctgaccatggcg
agtctcccgttcccgttcgacttcgagcgcagcgtggacgactgggtgttcatgtgcttc
ttcgtggggaacgacttcctgcctcacctgccgtcgctcgagatcagagagggcgctatc
gaccgcctcgtcggcatctacaaagacgtggtgcataaaaccgggggttacctgacggag
agcggcttcgtgaacctggagcgggtggagctcattatgcaggcggtgggcgtggccgag
gacaacatcttcaggaagcgcaaagaggacgacgaaagcttcaagaggcgaatgaaggag
aagaagaaaaggatgaaggcggagcagcagcgtccggcgtttctgaccacggggcagttt
gctcctcaggctctgggaggacgagggcgaccggagcccgtccagaacgcccgacaccag
gccttcagcatgagggtgcagaacatggagacgcacaaccgggacgcggctcagtctctg
aaggccatgatgaggaacggaggaaactcgtctgcaggtccgtctgaccctcgcggcgtc
aagaggaaagccgaggacagcgacagcgaaccggagcccgaagacaacgtccggttgtgg
gaggagggctggaaacagagatattacaaaaccaagtttgacgtcgacgccacagacgac
gagttcaggaagaaagtggttcagtcgtacgtggaggggctctgctgggtcctcagatac
tactaccaggattaagtgtcgtggaagtggtatttcccgtttcactacgcgccgttcgcc
tctgacttcaaagacatcaaagacatgttcaaagagttcgagaaggagaccaaaccggta
acacctgcctgcacctgtctgtgtctgtaccctcgcccgcacctgtctgtgtctgtaccc
tcacctgtcttgtgtctgtaccctcacctgtctgtgtctgtgccctcacctgtttttgtc
ctcgtcttctcaggagtggcgttgttgccgtttgtggacgagcgcagactccgagcggct
cttgccgatgtttatccagatctgacccaagaggaagtgaagaggaacagtttgggcagc
gacattctgttcctggggaaatctcacccgctcttcgacttcatccacgaactgtaccgc
acggagaccgcagagcccacagacgtccctcctgaactctgccacggcatcctgggaaaa
ctgactctggaccaagacccaatactcccagacaagatggtggagtctccgatcccgacg
ctcagggacatcacacagaacttctccatcggggtgaggttcaaagatccagagtttgat
cctggacacgtgtttaaagccgtgatgctcccgggggcaaagatccccggtaaagtcctg
aagcccgaggactttaactcgagcggccgtcagccctggagaccacagctcggcttcaac
cccaacagacagcaggctcacctcggccaatcaggacacagagcgctcaatcactctctg
ggccgaggaggaggaggtcagtacagcaacacgccccctccaggaaactaccagaactac
aggggaccacagcagcactatccacctgctcgtcagaacagtctgttgggggctcctccg
ttccagcagcagttccacaggccgtcgcacgggggcggggctcacgtctgggaccgggcc
aatcagaaccagcacaacgccttccagcagaactccatgagggggcgctctgcgggagga
taccaacaccaacaaacacaacaacaccaacaaccacaacaccaacaaacacaactccag
acgtaccaacaacaacaccaacaccaacaacaaccgtacaaccaacaccagaggagagac
gagcgaggagcaagaggagcagcaggaggacagggctataactccggtcgtggtggatac
ccggctcctcctccgtccagacgctacaactggaactaa
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