Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110164359
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Entry
110164359 CDS
T05002
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110164359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110164359
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110164359
mRNA degradation factors
5'-3' decay
Decapping complex
110164359
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110164359
NCBI-ProteinID:
XP_020785050
LinkDB
All DBs
Position
Unknown
AA seq
798 aa
AA seq
DB search
MFRFQSLDDDCTLEEEDDGLIEEEDEIDQFNDDTFGAGAIEDDDWQEEHKRLAELDERDG
LGGVVPGSGPGSGPGLGAMGGAADTPPLGPPASSLPSLNFTSSSGFPRPDTEERGGGGGD
LAESLARFILDADPAIAGVGAAERPNPALSGLQGLDRSRVLPQPAPIPNQLPPHPQMPST
SGLPLGPASMLSYQQQQQQHLMRRGTSPMGQMNSHNIWENSMGFGPVSVTPGLPTHMEDS
PLMSIIKEVGLPKRPPQNRSDESRDLSERVPPPRSSSPVIGSPTPPKQPMSHALNHQIHH
PTAVHVRAPVPHRYPPPHFPERLSPNTLLNIANSPLCRGPFPPGVLSQIQRAQMLNSQVA
GFPRGGPPPMMPGGGFRPFFGGPPPHGHRMGPPPPHGPPNHPPPIRHNTTHLHPQHRRML
TQRMQSRGGGRPGLDRRSRDPYSNLMTQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEK
MEKRQEKERDSSKKEHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVV
TSRSDDEEKREKQVWNKRRQILYTVEKMYSLLLEVQDFEKRFVLTPEEEREALLEQHKTN
TVQLCNSLREKEWEDKVSDEQLVMIMSVRKGKRLISRLFPFLPSAQATAVLMAIARNLPA
LAKKDKQDQVLCWLVEPVSTVVQSMSSSALTDLLQELQSTEGQLASVLHNKFGVTLLYLI
LSEGERMQSSEPNCQLMDDNRWTELVFSVTRELLSVPSASLSPPLFTPPNLLSLFSRYVD
RQRLELLQDKLQISALSR
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggatgatgactgtacgttggaggaggaggatgacgggctg
atagaggaggaagatgagatcgatcagttcaatgatgacacatttggggcaggagcaatt
gaggatgacgactggcaggaggagcacaaacgtctggcggagctggatgaacgcgatgga
ctgggaggggttgtgccaggatctggaccgggatctggaccgggactcggagctatgggg
ggagctgcagacaccccaccacttggcccccctgcatcatctctgccctcactaaacttc
acgtcttcctctggttttcctcgtccagatacagaggagagaggaggagggggaggtgac
ctggcagagtccttagcccggttcatacttgatgcagaccctgccatcgctggtgtgggg
gcagcagagagaccaaaccccgctctgtccggtctccagggtttggaccggtccagagtc
ctgcctcagccagcccccatcccaaaccaactcccccctcacccccagatgccctccact
tctggcctgccccttggccctgcatcaatgctcagctaccagcagcaacagcagcagcac
ttaatgcgcagaggaacttctcctatgggacagatgaactctcacaatatttgggagaac
agtatggggtttgggcccgttagcgtcaccccaggactgcccacgcacatggaggacagt
ccacttatgtccattatcaaagaggtgggtttgcccaaaagaccacctcagaaccggagc
gatgaaagcagagatctgtcagagagggtgccgccccctcgctcatcctcgcctgtgatt
ggctctcctactccacccaagcaaccaatgagccacgccctcaaccatcagatccaccac
cccactgcagtacacgtccgcgccccggtgcctcacagatacccccctcctcatttccct
gagcgcctatctccaaacaccctcctcaacatagcaaactcccctctgtgccgcggtcca
tttcctcctggagttttgtctcagatccagagagctcaaatgctcaactctcaggtggca
ggcttccctcgcggaggcccccctcccatgatgcccggaggtgggttcaggccgttcttc
ggtggtcctcctcctcatgggcataggatgggaccaccccctcctcatggaccccccaac
cacccgccacccattcgccacaacaccacccaccttcacccacagcatcgcagaatgctc
acccagcgcatgcagagccgaggagggggccggcctggactggatcggcgcagcagagac
ccctacagtaacctgatgacccagaaggagaaagagtgggtcaccaagatccaaatgatg
cagctccagagcactgacccctatttggatgactactactaccagaactattatgaaaag
atggagaagcgtcaggaaaaggaacgagacagcagtaaaaaggagcataccaccaaactc
attactccacaggtggccaaagtggagcacacctacaggccagtccagtttgcaggatct
ctgggtaaactgacagtgtccagtgtcaacaaccctcgaaagatgatcgatgcagtggtg
acgagtcgctccgatgacgaggaaaagcgtgagaaacaagtttggaataagagacgccag
atcctctatacagtggagaagatgtacagtttgttgctggaggtgcaggactttgagaaa
cgttttgtcctgaccccagaggaagagagagaggctctgctcgaacaacacaaaactaac
acggttcaactctgcaactctttgcgtgagaaagagtgggaggacaaggtgagtgacgag
cagctggtgatgatcatgtccgtgaggaaggggaagcggttgatctccaggctcttcccc
ttcctgccctctgcccaggcaacagccgttctcatggcaattgcccgaaacctgcccgca
ctcgccaagaaggacaaacaggaccaggtgctgtgttggttagtggagcccgtctctact
gtggtccagtccatgtccagctctgctctcactgacctcctccaggagttgcaaagcacc
gaggggcagctagcatcagtgctacacaacaagtttggagtgacgctgctgtatctgatc
ctgagtgaaggggagcggatgcagagctctgagccaaactgtcagctcatggacgacaat
cgatggactgagctggtgttctctgtgacgcgggagctgctgtctgtcccgtccgcgtct
ctgtctcctccgttattcacacctccaaacctcctctcactcttctcccgctacgttgac
cggcaaagattggaattgttacaagacaaactacagatctcagctttgtccaggtag
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