Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110164597
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Entry
110164597 CDS
T05002
Symbol
pan2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110164597 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110164597 (pan2)
Enzymes [BR:
bpec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110164597 (pan2)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110164597 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
110164597 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
Motif
Other DBs
NCBI-GeneID:
110164597
NCBI-ProteinID:
XP_020785326
LinkDB
All DBs
Position
Unknown
AA seq
1207 aa
AA seq
DB search
MMNFDGLDPGMGEYPPALHGALDAGIEPSMDPHLNPTLMGPGVELDPEALAVAVPETVHL
VEGMFSELHSVVSEVGIPVTATHFDLQEEMLWMGNHRGHATSFFGPTMGRYSSFQVHASD
DIRHIQSLETGVLFLSKNDLKCCTRGGIVMFDYPMEEGADMHSLLMTDNNTVLMGGLQNY
VVEVDLNTVQETQKFTVEVPGVAIMRQTSRFFFCGHTSGKVTLRDLRSFKTEHEFDAFSG
SLSDFDVHGNLLAACGFSSRGLNGLACDRFLMVYDLRMMRAVTPLQVHIDPLFLRFIPTY
TSRLAIISQTGQCQFCEPTGLANVADIFHVNTVGQLLMSFDVSSSKQALAFGDSGGCVHL
WSDAPEVSFNDYSRETEFALPCIVDSLPQLDWNHDLLPLSLIPTPLTSTEPLLSDWPPAL
AMPCPRRAPPVDPEILRTMKTVGFIGYAANPRTRPRNQVPYKIKDVEQDYDSYNQVPESP
IGRDEEPHLYMVPKKFRKVTIKYSKLGLEDFDFKHYNRTLFAGLEPHIPNAYCNCMIQVL
YFLEPIRCLVQNHLCQKEFCLACELGFLFHMLDLSRGDPCQASNFLRAFRTIPEASALGL
ILADSDEQTGKARLGRLIQSWNRFILTQLHQETQEQEGPQAYRGSSSALGSSGESVIGKL
FGCEVENSSLCRCGKETVRSTLTLLFTMHYPEHNSQDKIKEYDFAEILKKSICLEQSTQA
WCENCEKYQPTVQTRNIRCLPDVLVINCEVNSAKEAEFWRVQAEYAFNKAMQKEASEPPK
PKEPPPPMPTEWCLDAEEVCSLEGFSFDTRAEDLRHVWIPLTLKMCISKTQGLEISSWNE
AEELSAEEEAEGASLYDLVVTVPHILDARTGGNLVAHIKVGETYHQRKEGVTHQQWYLFN
DFLIEPIDKTEAVQFDVSWKVPGILYYAKRNYHTKYDLRIKNPIDASVLLTEASLARKQR
KTHATFIPLMVSEMPQAGDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVR
GQGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLID
TGVRFVGHGLQKDFRVINLFVLKDQVIDTVHLFHLPRKRMISLRFLAWYFLDLNIQGETH
DSIEDARTALQLYRKYLELSRGGGSDEVRKVLKGLYEKGRQLDWKVPETESGAESQGAAV
FPSVMGL
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgatgaactttgatggattggaccctgggatgggtgagtatccacctgccctccatgga
gcactggatgcaggcatagagccatccatggacccccatctgaacccgaccttgatgggg
cctggcgtggagttggatccagaggcactggctgtggctgtacccgagaccgtgcacctg
gtggagggcatgttctcggagctccacagtgttgtgtcagaagtgggcatccctgtcacc
gccacacatttcgatctgcaggaggagatgctttggatgggcaatcatagaggtcatgcc
acatctttctttggtccaacgatggggcgatactcatcttttcaagtgcatgcatcagat
gatatccggcacattcagagcctggagactggggtcctgtttctgtccaaaaacgatctc
aaatgctgcactcgaggaggcatagttatgtttgattatccgatggaggagggagcggac
atgcacagtctcctcatgacagacaacaatactgttcttatggggggactacaaaattat
gtcgttgaagttgatttaaatacagttcaagagactcaaaagttcactgtggaggtccct
ggggttgcaataatgagacagacgagtcgattcttcttctgtggacacacctcgggcaaa
gtcacacttcgggatttgcgcagctttaaaacagagcatgagtttgacgctttctctgga
agcctgtctgattttgatgtccatggaaacctgttggctgcgtgtgggttttcaagtcgc
ggtctgaatggtttggcatgcgaccgctttctgatggtgtatgacctcagaatgatgcga
gccgtgaccccactgcaggttcacattgaccccctgtttctgcgcttcatccccacctac
acctcccgcctggccatcatctcacagacaggccagtgccagttctgtgagcccaccgga
ttagcaaatgtagccgacatcttccatgtgaacacggtggggcagttgctcatgagcttt
gatgtttcatcaagtaagcaggcactggcattcggagactcagggggttgtgtgcacctc
tggtcggatgcaccagaagtctctttcaacgattattcaagagagacagaattcgctttg
ccatgtattgtggacagtctacctcagctggattggaaccatgatctcctgcctctgtcc
ttgatcccaacccccctcacctccactgagcctctgctgtccgactggccccctgcactg
gcaatgccctgtccaagacgggcccctcccgtggacccagagattttgcgcacaatgaag
actgttgggtttatcggatatgctgccaatcctcgcacccgtccacgaaaccaggtgccg
tacaaaatcaaagatgtggagcaggactacgacagttataaccaggttcctgagtctccg
atcggccgcgacgaggagcctcacctgtacatggtccccaaaaaattcagaaaggtcaca
atcaaatactccaaactgggactggaggatttcgatttcaaacattacaatagaacgctt
tttgcaggtctggagcctcacatcccaaatgcctattgcaactgcatgatacaggtcttg
tatttcctggagccaatccgctgtctggtgcagaatcacttgtgtcagaaagagttctgt
ttggcctgtgagctgggctttctcttccacatgttggacctatcgagaggagatccctgc
caggccagcaacttcctgcgggcattccgtacaatcccggaagcgtctgctctaggcctg
atcctggccgactcagatgagcagacggggaaggctcgtcttgggcgtctcatccagagc
tggaatcgcttcattcttactcaactgcaccaggagacacaggagcaggagggaccacag
gcctacaggggctccagcagtgctctgggctcgtctggggagtcagtgattggtaaactg
tttggttgtgaagtggagaacagcagtctgtgtcgctgtggtaaagagacagtgcgctcc
actctcactctgctcttcaccatgcactaccccgaacacaactcacaagataagataaag
gaatatgattttgctgaaattctgaagaagagcatttgtctagaacagagcacacaggcg
tggtgtgagaactgtgaaaaataccaacctacggttcaaacacgaaacatccggtgcctc
cccgacgttctggtcataaactgtgaagtgaacagtgccaaagaggccgagttttggaga
gtccaggctgagtatgcattcaataaggccatgcagaaagaggcgagtgagccacctaaa
cccaaagaacccccgccccccatgccaacagagtggtgcctcgatgcagaggaggtgtgt
agtctggaaggcttcagcttcgacactcgggctgaggacctgagacatgtgtggatccct
ctgacactgaaaatgtgcatcagtaaaacacaaggcctggagatcagcagctggaatgaa
gcagaggagctgagtgcagaggaggaggcggagggggcgtctctatacgatttggtggtg
acagtgcctcacattttagatgctcggaccggaggaaacctggtggctcacattaaagtg
ggagagacctaccatcagaggaaagagggcgtgacacatcagcagtggtaccttttcaat
gacttcttaatagaaccaattgataagactgaagctgtgcagttcgatgtgagctggaag
gtgcctgggatcctttattatgccaagaggaactaccataccaaatatgacctccgcata
aagaaccccatagatgcaagtgtgctactcacagaggcatctttggctcgtaaacagagg
aagactcatgccaccttcatccctctgatggtcagtgagatgccccaggccggagacctg
gtcgggctggacgctgagtttgtcacactcaaccaggaggaggcggagctacgcagtgac
ggcaccaaatcgaccatcaaacccagtcagatgtctgtggcccggattacctgtgtcaga
ggccagggtcccaatgagggcgtgccttttattgatgattatatctccacccaggagcag
gtggttgactatctgacgcagtattcaggtattaaacctggagacctcgatgcaaagatc
tcatccaaacacctgaccaccctgaagtccacatatctgaagctacggttcctcattgac
acaggggttcggtttgtcggtcatgggctgcagaaggactttagagttatcaacttattt
gttttgaaagaccaggttatagacactgtccacttgtttcatttgccccgaaagaggatg
atttctctaaggttccttgcctggtacttcctagacctgaacatccagggggaaacccat
gacagcattgaggacgcacgcactgctctacagctctacagaaaatacctggagctgagt
cgaggaggaggctcagatgaagtgaggaaagtcctgaaagggctgtacgagaagggccgc
caactagactggaaagtcccagagactgagagcggagcagaaagccaaggtgcagctgtg
ttcccctctgtgatgggattgtaa
DBGET
integrated database retrieval system
