Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110164793
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Entry
110164793 CDS
T05002
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04510
Focal adhesion
bpec04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110164793
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110164793
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bpec00536
]
110164793
Glycosaminoglycan binding proteins [BR:
bpec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110164793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
110164793
NCBI-ProteinID:
XP_020785574
LinkDB
All DBs
Position
Unknown
AA seq
1483 aa
AA seq
DB search
MFGFVDSRTLLLLVASQVVLLSVVRCQGIDQITGGCSQDGQQYNDKDVWKPEPCRICVCD
SGAVLCDEIICEDIKECANPIIPSGECCPICPADETAPIVGAKGQKGEPGDIADIIGPRG
PPGPQGPIGDQGPRGEPGPKGDMGLPGPRGRDGEPGIPGNPGPRGPPGPPGPQGLGGAFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGAPGETGEPGPAGPMG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
EDGAAGAKGETGAAGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGEPGLAGLKGEAGPKGELGPAGPQG
PPGPAGXXXXXXXXXXXXAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVAGAAG
PKGATGDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPAGAPGEDGRPGPPGPLGARGQPG
VMGFPGPKGANGEPGKPGEKGLVGRPGLRGLAGKDGETGPTGPPGPAGPAGERGEQGQPG
PPGFQGLPGPIGPPGESGKPGDQGLPGEGGAPGAVGARGERGFPGERGGAGPQGLQGPRG
LPGTPGTDGPKGAIGPAGAQGAQGPPGLQGMPGERGAGGIPGPKGDRGDNGAKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPSGPNGAPGARGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGEVGEAGQKGEAGAPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGAPGPNGNPGPVGPPGPGGKDGPKGARGDAGPPGRQGDAGLRGPPGAQGEKGEAG
EDGPPGADGPAGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRGPPG
PVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGPAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQG
LPGPPGPAGDAGAAGPAGPSGAKGPAGPAGPAGKDGTNGQPGPIGPPGPRGRSGESGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASTSLRQHDVEVDSTLK
SLNNQIENLRSPDGTQKNPSRSCRDLKLCHSTMSSGEYWIDPNLGSTADAIKAFCNMETG
ETCVYPTIASLPKKNWWTAKSKEHKHIWFGDMNGGFQFSYAQNSPFATVQLNFLRLLSTE
ASQNVTYHCKNSIAYMDQASGNLKKALLLGGSNEVEIRAEGNSRFTYSVLEDGCKRHTGR
WGKTVFEYKTTKTSRLPILDIAPRDIGGADQEFGVDLGAVCFL
NT seq
4452 nt
NT seq
+upstream
nt +downstream
nt
atgtttggctttgtggattcacggactctcctgctacttgtagcatcccaagtcgtttta
ctatctgtggtgagatgtcaagggattgaccagataacaggcggctgcagtcaggacgga
cagcagtacaatgataaagatgtgtggaagccagagccgtgtcgtatttgtgtgtgcgac
agcggagcggtgctttgcgatgagattatctgtgaagacatcaaagagtgcgccaatcct
atcatcccatctggagagtgctgccccatctgccccgctgatgaaactgcacctattgtt
ggtgctaagggccaaaagggtgaaccaggagacattgcagatattataggaccaagagga
ccaccaggaccacaaggccctattggcgaccaaggaccacgaggcgaacctggaccaaaa
ggtgatatgggacttcccggaccccgaggaagagatggagagcctggcatacccggaaac
cctggaccacgcggaccacccggaccacccggaccacaaggacttggaggggcctttgct
gctcagatggctggaggatttgatgagaaggctggaggtgctcagatgggcgtgatgcaa
ggaccaatgggacctatgggaccacgtggaccccctggacctactggagctcctggacct
cagggtttccaaggtgcccctggtgaaactggagagcccggacctgctggaccaatggga
ccccgtggaccacctggaccatctggaaaaccaggaagtgatggtgaggctggaaaacct
ggcaaagctggtgagcgtggacctgcaggaccacagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcaccccggtttggacggcgcaaaggga
gaagatggtgctgctggagccaagggagagactggtgctgctggagagaatggagcccct
ggcccaatgggccctcgtggtctgcctggtgagaggggacgtcctggagccgctggagct
gctggtgcccgtggaaatgatggcctgcctggtcctgctggtccacctgggcctgttggt
cctgctggagcacccggtttcccaggatccccaggagctaagggagaagctggccctact
ggtgcccgtggagctgagggagcacagggacccagaggagaggctggtacccccggatct
cctggacctgctggagcatctggaaaccctggtactgatggtattcctggagctaaaggg
tctgctggtgcccctggtattgctggagcccccggtttccctggtcctcgtggcccacct
ggacctcagggagccactggacctctgggaccaaagggacagtctggagagcctggtctt
gctggattgaaaggtgaagctggtcccaaaggagagcttggtcctgctggtcctcaaggt
ccccctggtcctgctggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagcagct
ggtcccctcggacctcctggagagagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgcccctggtgaccgtggtgttgctggagctgctgga
cccaagggtgctactggagaccccggccgcacaggagagcctggcctccccggagcaaga
ggtctcactggacgtcctggagatgctggtcctcagggcaaagttggacctgctggagct
cctggtgaagatggccgccccggtcctcctggtcctctgggagctcgtggacagcccgga
gttatgggattccctggacccaaaggagccaatggtgaacctggaaaacctggtgagaag
ggtcttgtgggtcgccctggtctgagaggtctggctggaaaagatggagagactggcccc
actggacctcccggccctgctggacctgctggagagagaggagagcaaggacaacctgga
ccccctggtttccagggtctgcctggtcctattggacctcctggagagagtggaaaacct
ggagaccagggtcttcctggagagggcggtgctcctggtgctgttggagctagaggtgag
cgtggtttccctggtgagaggggtggagctggacctcagggtctgcagggacctcgtgga
cttcctggaactcctggaactgatggacccaagggagctattggaccggctggtgctcaa
ggcgctcagggccctcctggtctgcagggcatgcccggagagagaggagctggtggcatc
ccaggacccaaaggagacagaggagacaatggtgcaaagggacctgagggagctcctgga
aaggatggtgctagaggtttgactggacctattggtcctcctggtccatctggtcctaat
ggcgctaagggtgagactggacctagtggcccgaatggtgctcccggagctcgtggtgcc
cctggtgaccgtggtgaggttggtcctcctggccctgctggctttgctggacctcctggt
gcagatggtcagcctggagccaaaggagaagtgggagaggctggacagaagggagaggct
ggtgcccctggacctcagggaccctctggagctcctggacctgttggacccactggtgta
tctggacctaaaggagctcgtggtgctcagggcgctcctggtgctactggtttccctggt
gctgctggaagagttggagctcctggacctaatggcaacccaggacctgttgggcctcct
ggtcccggtggtaaagacggacctaaaggcgctcgtggtgatgccggacccccaggacga
cagggagatgctggtctgcgcggcccacccggagctcagggagagaagggagaggcagga
gaggatggaccccctggcgctgatggacctgcaggacctcagggtttggctggatctcgt
ggtattgtgggtttgcctggacagcgtggagagagaggcttccctggtctgcctggacct
tctggtgagcctgggaaacagggagccccaggaggtgctggagaccgtggaccccctgga
cctgttggaccccctggactcaccggacctgctggagagcctggcagagagggaaatcct
ggatcagatggaccccctggcagagatggagctacaggagtcaagggagagcgcggtaac
actggacctgctggagctcctggtgcccctggagcccccggcgccccaggacctgtagga
cctttgggaaaacagggagacagaggagaggctggagctcaaggacctgctggaccccct
ggacctgctggagctagaggcatggctggaccccaaggaccccgtggagacaagggtgag
gctggagaggctggagagagaggacagaagggtcaccgtgggttcaccggtctacagggt
ctgcctggacctcctggccccgctggagatgctggagctgctggacctgccggaccaagt
ggagctaagggccctgccggacctgctggacctgctggtaaagatggaactaacggacag
cctggccccatcggaccccctggaccccgcggtcgctctggagagtctggtcctgctggt
cctcctggtaaccctggaccccctggacctcccggacctcctggccctggcattgacatg
tctgctttcgctggtctgggtcagactgagaagtctcctgatcctctgaggtacatgagg
gctgatgaggcttccacctccctccggcagcacgatgttgaggtggactccactctcaaa
tccctcaacaaccagatcgaaaacctgcgcagccccgatggcacccagaagaacccatcc
cgctcctgcagagatctgaagctgtgccacagtacaatgtcctcaggtgaatactggatt
gatcctaacctgggcagcacagctgatgccatcaaagccttctgcaacatggagactgga
gagacctgtgtctacccgactattgccagtctaccaaagaagaactggtggactgccaag
agcaaggaacacaagcacatctggtttggagatatgaatggaggattccagttcagctac
gctcagaacagccccttcgccaccgtgcagctcaacttcttgaggctgttgtcgactgaa
gcatctcagaacgtcacgtaccactgcaagaacagcatcgcctacatggaccaggcctca
ggaaacctgaagaaggctctgttgctcggaggctccaacgaggtggagatccgcgcagag
ggcaacagccgcttcacctacagcgtgctggaggacggctgcaagagacacacaggccgg
tggggcaagactgtctttgagtacaaaacaacaaagacctctcgtctgccaattctggac
attgctcctcgagacatcggaggagccgatcaggagtttggtgtggatctaggtgcagtc
tgcttcttgtaa
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integrated database retrieval system
