Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110165300
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Entry
110165300 CDS
T05002
Symbol
col11a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110165300 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bpec00536
]
110165300 (col11a1)
Glycosaminoglycan binding proteins [BR:
bpec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110165300 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
110165300
NCBI-ProteinID:
XP_020786130
LinkDB
All DBs
Position
Unknown
AA seq
1812 aa
AA seq
DB search
MQRCSTRWKTRRWIMDSTVTAFITLTLVLHASNVKAAEPVDVLKVLEFQSSPEGVTKTSG
FCTHRRASKPDTAYRVTNQVQLKAPTTQLFPGGAFPEDFSLLTTVRPKSSLQSFLLSVYN
AQGVQQLGVELGRAPVFLYEDQNGKPSPEEYPLFNTLNMADGKWHRVAISVDKKTVTIIV
DCKTKITKPLPRSDQGTISADGETFFGTKNQDEGFQGDIQQLLIVADPTAAYDYCEHYSP
DCDTPHGQRVQAQEAEEYFTDDLDYSQFYDYSEGATDAVPTDEYAEPQVNEQNKTKTKQF
RFLLTLALFFCPFXNMTQLNNVEGDYNTDIDYGTLDETQTQSPYDTSGPHEPTTAAPETH
GSDAYDFNAYDLKEYDLGEVDSKVYDYTSYDDYGTDKAKATAAPDDEVGPGVAAETDISE
SAIAGVEAFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGTSGDPGERGP
PGRPGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGP
MGLTGRSGPVGLPGSPGLKGESGDPGPQGPRGIQGPAGPPGKAGKRGRAGADGARGMPGE
PGSKGDRGFDGLPGLPGEKGHRGEPGPPGPIGAPGEDGQRGEDGEIGPRGLAGESGPRGL
LGPRGPPGPPGAPGVAGVDGPHGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGE
KGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRGVKGADGVRGL
KGGKGEKGEDGFPGFKGDMGIKGDRGELGLPGPRGEDGPEGPKGRSGPNGESGPLGPAGE
KGKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGARGA
RGPTGKPGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGE
TGFQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAGGKEGAKGDPGP
QGSPGKDGPPGLRGFPGERGLPGAPGPAGLKGGEGPQGPPGPVGSPGERGSAGQAGPIGL
SGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGE
PGQKGSKADKGEQGPPGPPGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGPRGFPGP
PGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGE
KGEQGEAGNPGQPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGF
PGDPGPPGEPGVAGTDGEPGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAPGAEGR
QGEKGAKGEAGAEGPAGKTGPVGPQGPPGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGP
MGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGGKGDNGIAGS
AGPLGPPGPPGLPGPQGPKGAKGSSGPAGAKGDTGAIGPPGPPGPPGEVIQPLPISSPKK
TKRSSDMQADAAGGYMDYGEGMEDIFSSLNLLKQDIERMKYPMGTQNNPARTCKDLQLSH
PEFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKETPGSWFSE
FKRGKMLSYVDAEGSSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDSTSDSYDKALRF
LGANDEEMSYDNNPYIKALSDGCATRSGYAKTVMEINTPKIDQVPIVDVMLTDFGDPNQK
FGFEVGPVCFLG
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggtgctccacaaggtggaaaacgagaaggtggattatggattccactgtaact
gcattcatcactttaaccctggttctacacgcgtctaatgtcaaagcagcagagccagtg
gatgtccttaaagtattagaatttcaaagttcccctgaaggagtgacgaaaacatcggga
ttttgcacacaccgacgagcatcgaagccagacacagcttacagagtcaccaaccaggtc
cagctcaaggcccccaccacacagctattccctggtggtgcatttccagaagacttctct
ctcctgaccactgtccgcccaaagtccagcctccagtcgttcctgctctccgtctataac
gcacagggggtccagcagctgggtgtggagcttgggagagcacctgtgttcctgtatgag
gatcagaatggcaaaccttcacctgaggaatacccactcttcaatacactcaacatggcc
gacggaaagtggcatcgtgtggctatcagtgttgacaagaagactgtgactattatcgtc
gactgtaaaaccaagatcaccaaacctctccccaggagtgatcagggcaccatcagcgct
gacggagaaactttctttggcaccaagaaccaggacgaaggcttccagggtgacatccag
cagctcctgattgtggccgatcctaccgctgcctacgactactgtgaacactacagccca
gactgtgatactccccacgggcaaagagtccaagctcaggaggctgaagagtactttact
gatgacttagattactctcagttctatgattactctgagggagccacagacgctgttccc
accgatgagtatgcagagcctcaggtaaatgaacagaataaaaccaagacaaagcagttt
aggttcttgttaacgcttgctttattcttctgtccttttnccaacatgactcagctaaac
aatgtagaaggagattacaatacagacattgactacgggacgttagatgaaactcaaact
cagtccccctatgacaccagtggacctcatgagcccaccaccgccgccccggaaacgcac
ggttcagacgcgtatgactttaacgcgtatgacctaaaggagtatgacttgggagaggtt
gacagcaaagtttatgattacaccagttacgatgattatggcacggacaaagccaaggcc
accgcggcccctgacgatgaggtggggcccggggtagcggctgagacggacatttcagag
agcgccatcgctggagtcgaagcttttgggcagaagggagagaagggagagcctgctgtc
atcgaacctggtatgctgattgaaggaccacccggacctcctggcccagctggtcttcca
ggtccctccggccttcaaggacctccaggcacttctggagatcctggtgaaaggggtcct
cctggtcgtcctggtctgcctggtgctgatggtttgcctggtcctcctggtacaatgctg
atgcttccattccgttttggtggagatggtgagaagggtcccgtagtgtctgcccaagaa
gcccaagctcaggccatcctctcccaggccaggctggcgatgaggggacccccggggcca
atgggtttgacaggaagatcaggaccagtgggtcttcccggttctcctggacttaaaggt
gaaagtggagatcccggcccacagggtcctcgtggcatccagggacctgctggaccacct
ggcaaagcaggaaagcggggccgtgccggagctgatggagcccgtggaatgcctggagag
ccaggttctaagggcgaccgtggctttgatggactgcctggactgcccggtgagaaggga
cacaggggagagcctggacctccaggaccaatcggagctccaggagaggatggacagaga
ggtgaagatggagaaatcggaccaaggggactggctggagagagtggtcctaggggtttg
ttggggccacgtggaccacccggaccacccggagcccctggtgttgctggagtggatggg
ccccatggtcctaaaggaaacatgggaccacaaggtgaaccaggcccacccggacagcaa
ggaatcccaggaacgcagggtctccctggtcctcaaggccccattggaccacctggagaa
aaaggaccccagggcagatccgggttgcctggtttacctggagctgatggtcctcctggt
caccctggaaaagagggtccacctggagagaagggaggtcagggtcctccaggtccacag
ggtcccattggttatcccggccctcgtggtgttaagggagctgatggtgtccgtggtctg
aagggaggaaagggagagaagggtgaagatggtttcccaggtttcaagggagacatggga
atcaaaggagaccggggagagcttggtttgcctggcccacgcggagaggatggtcctgag
ggtcccaaaggccgatctggacccaacggagagtctggtccccttggtcccgctggagag
aagggtaaacttggtgttccaggattgccaggttatccaggaaggcaaggacctaagggc
tccagtgggttcccaggcttcccaggagccaacggagagaaaggcgctaggggaattgct
ggaaaacctggtccaagaggtcaaaggggtccaacgggtccgcgtggagctagaggagcc
aggggtcccacaggaaaaccaggacctaagggcacagcaggcaacgatggcccccctggt
ccacccggagagagaggaccacaaggacctcagggaccggtgggcttccctggaccaaag
ggaccccctggacccccaggaaaggacgggctgcccggacaccctggacagagaggagag
actggtttccaaggaaagactggtccacctggtcctggaggagtagtggggccacaggga
cccactggagagaccggtccagttggtgaaagaggccatccaggaccccccggaccacca
ggagagcagggtctacccggagctggaggcaaagagggtgcaaagggagacccaggtccc
cagggatcccccggtaaagacggtcccccaggtctgagaggcttccccggagagagaggt
ctgccaggcgctccgggtcctgctggtctaaaaggcggagaaggtccccaaggtccccct
ggccctgtgggctcccctggtgagagaggcagtgctggccaagctggtcccattggtttg
tccggtcgacctggccctcaaggtcccccgggtcccgctggagagaagggtgcacctgga
gagaaaggtccacagggtccagctggtcgcgatggagtccagggtccagtcggtctgccc
gggccggcgggaccccaaggtccacctggagaggatggtgacaagggagaggtgggagag
cctggacagaagggaagcaaagctgacaaaggggagcagggtccacctggtccacccggt
ctccaaggtcccattggtgcccccggacccgctggcgctgatggagagcctggtcccaga
ggtcaacagggtatgttcggacagaagggagacgaaggtccaagagggttccctggtccc
cctggtcccatcggcctgcagggtcttcctggacctcctggtgagaagggagagaatggt
gacgttggtccaatgggtcctcctggtccccctggtcccagaggtcctcagggtcccagt
ggtgctgatggtcctcaaggtcctcctggcggtgtgggtccgatgggatccgtgggtgag
aagggtgaacaaggcgaggctggtaacccagggcaacccggagagccaggaacaggggga
cccaaaggtgagaggggcgagaagggagaggccggaccccctggagctgctggtcccgcg
ggtgctaaaggaccccccggagatgatggtccaaagggtaaccctggtcctgttggattc
cctggagaccccggcccccctggtgagcctggcgtagctggcactgacggagaacctggt
gagaagggagaggatggtgaagccggacaaccaggacccccaggaccatccggagaagcg
ggcccacctggaccacctggcaaaagaggacctccaggagctccgggtgcagagggcagg
caaggagagaagggcgctaagggagaggctggagctgagggacctgcaggtaaaactgga
ccagtcggaccccaaggaccccccggaaaaccaggtccagaaggtctaagaggaatcccc
ggccctgttggtgaacagggtctgcccggcgccccaggacaagacggtccacctggtccc
atgggtcctcctggtctccccggtttgaaaggtgaccccggctctaaaggtgaaaagggt
cacccaggtttgattggtttgatcggaccgcccggcgagcaaggagagaagggagaccgc
ggtttacctggacctcaaggatcccccggtggaaagggtgacaatggaatcgctggatct
gctggcccccttggtccccctggcccgcctggtctgcctggtcctcaaggtccaaaggga
gctaaaggttcatcgggtcctgctggtgccaagggagacacaggtgctattggtccccca
ggtcctcctggtccccctggcgaggtgatccagcccctgcccatctcctctcccaagaag
accaaacgctccagtgacatgcaggctgacgctgccggcgggtacatggactacggagag
ggcatggaggacattttcagctccctaaaccttctcaaacaagacatcgagcgcatgaag
taccccatgggcacacagaacaaccccgcccgaacctgcaaggacctgcagctgtcccat
ccagagttcccagatggcgagtactggatcgatccaaaccagggctgctccggggactct
ttcaaagtctactgtaactttacggctggtggcgaaacctgcatctacccagataagaaa
tccaatggggtcagaatatcgtcatggcccaaagaaacgccagggtcatggttcagtgaa
tttaagcggggtaaaatgctgtcctacgtggatgcagaggggagctcgataaacatggtt
cagatgaccttcctcaggctcctcacggcgtcagcgcgtcagaacttcacgtacagctgt
caccagtctgtggcgtggcacgactccaccagcgacagctacgataaggctctgcgcttc
ctgggagccaatgacgaggagatgtcctatgacaacaatccctatatcaaagccctatca
gacggatgcgcgacgaggagtggctatgcaaagactgtgatggagatcaatactcccaaa
attgatcaagttccaattgttgacgtaatgttgactgactttggggaccccaaccagaag
tttgggttcgaagttgggcctgtatgtttccttggctag
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integrated database retrieval system
