Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110165351
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Entry
110165351 CDS
T05002
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03030
DNA replication
bpec03410
Base excision repair
bpec03420
Nucleotide excision repair
bpec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110165351 (rfc1)
03410 Base excision repair
110165351 (rfc1)
03420 Nucleotide excision repair
110165351 (rfc1)
03430 Mismatch repair
110165351 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpec03032
]
110165351 (rfc1)
03400 DNA repair and recombination proteins [BR:
bpec03400
]
110165351 (rfc1)
DNA replication proteins [BR:
bpec03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
110165351 (rfc1)
DNA repair and recombination proteins [BR:
bpec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
110165351 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
RuvB_N
AAA_5
AAA_30
Rad17
AAA_14
AAA_33
AAA_18
AAA_17
BRCT_2
RNA_helicase
AAA_7
NTPase_1
nSTAND3
AAA_19
AAA_16
TIP49
Motif
Other DBs
NCBI-GeneID:
110165351
NCBI-ProteinID:
XP_020786185
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MDIRRFFTSTAAKPAVQKPASNGKINVKSDDKKKTITLSSDEEVKVQKKTKVSKSGEKRK
DSEKKRKRHAVIESDSEEEKPVKSKKSPKVKLKKEQPLKKDPVQYVSETDSDSDNFQTLK
KASQAKQNGNGKTEKTNDKRTKESSKSPVKSSTQGKPVLKSPVTPKVAPPPKPKQTPTSV
FDYFGSRAIQRSDKKLVASTKRKTPIEDTDDISDEQLARQLQMDEDMQLEKQVHEDEEFA
RTLAMLDEEPLAKKARKGPDDVSSKKTTESASGSKSTPIKLQRKESFSEDVIAPSPKKSP
VKTSSKIAMMKKKDEDKEMSKNKIIVTPKKLISPKKESMSSPTPEKKFTPKSGTALTSPR
KTENTSTSPEDSEKKKGNASAYRNYLNRDGPRALGSKEVPQGAENCLEGFVFVITGVLES
MERDDAKALIERYGGKVTGNVSKKTNYLVQGRDSGVSKLEKAESFGTKILDEDGLFELIR
TKPGKKSKYEIAAEAEAKASKTRTPSSQAKSTPKSQKISPSKGNSRSPQTPSPSKTSLSK
AHSARVGQSGTPSGRGSGQTARRDLGLSSSSSSSKHPSSTSVSGEGASLLWVDKYRPRSL
KTVIGQQGDQSCANKLMRWLQNWHKNHSGGSSKPAVAKFGKFGGGKDDGSSFKAALLSGP
PGVGKTTTAVLVCEELGYSYVEMNASCTRSKNSLKEVVAESLNNTSIENFYKGTSQKVSS
KHVLIMDEIDGMAGNEDRGGIQEMIGLIKTSKVPIICMCNDRNHQKIRSLANYCFDLRFQ
RPRVEQIKGAMMSIAFKEGIKIPPPALNEIILASNQDVRQVLHNLSMWSAKNKVMTYDQC
KSDAANARKDMKLGPFDVCRKVFSSGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVR
PAAAAGDLKSHLVLISKTADSICDGDLVDRMIRSRQNWSLLPTQAIYASVLPGELMRGYM
GQFPTFPSWLGKNSSTNKHSRIVQELSSHMSLKTYCSRQAVNLDYLHYLRKALLSPLQRH
GSEGAAQAVQLLDDYQLVREDVDSMMEISVWGGQPDPYSKLDSKVKAAFTRAYNKEVHLT
PYSLQVVKKGRRGGGGGGDLELGEDMETEVRESEDEGDNLQTDAMIKQKKAKVTKEPKKE
KTEVSGKGKGRGKGKIKK
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggaggttcttcacatccacagctgcaaaacctgcggtgcaaaaacctgcc
tccaacggtaaaattaacgttaagtcagatgacaagaagaagactattaccttgtcttca
gacgaggaagtcaaggttcaaaagaagacaaaggtttccaaatcaggagagaagcgtaaa
gattcggagaaaaaacgcaagagacacgcagtaatagaatcagactcagaagaggagaag
cctgtgaagtcaaagaagtctcctaaagtgaaactgaagaaagaacagcctctaaaaaaa
gatccagttcagtatgtctcagagacagattcagacagtgacaactttcaaaccttgaaa
aaggcatctcaagctaaacagaatggcaatggaaaaacagagaagacaaatgataaaagg
actaaagagagcagcaaatctcccgtaaaatcttccactcaggggaaaccggtcctaaaa
tctcctgtcacccctaaagtagctccacctcctaaacctaaacaaaccccgacttcagtc
tttgactattttggcagcagggccattcagcgctcagataagaagctcgtggccagtacc
aagcgaaagactcccatcgaagatacagatgatattagtgatgagcaacttgccagacag
ctgcagatggacgaggacatgcagttggagaagcaggtccatgaagatgaggagtttgcc
cgaacccttgctatgttggatgaagaaccactggctaaaaaagctcgtaaaggccctgat
gatgtgagctccaagaaaaccacagaatctgcatctggttctaaaagtactccaataaag
ttacagcggaaagaaagcttttcagaggatgtcattgccccatcgccaaagaagagccct
gtcaaaactagctctaaaattgcgatgatgaagaagaaggatgaggataaggaaatgtca
aagaataaaattattgttacacccaaaaaattaatctcacctaaaaaagagagcatgtct
tcaccaactccagagaaaaaatttacacccaaatcaggaacagcacttacttctccaagg
aaaacagagaatacaagtacaagtcctgaagactcagagaagaagaaaggcaatgcttca
gcttacagaaactaccttaaccgtgacggtccaagggctctaggttccaaagaagtccca
cagggagctgagaattgcctggaaggttttgtgtttgtcataaccggagtactagagtcc
atggagagggatgatgccaaagcacttattgagcgttacggtgggaaggtgacaggcaac
gtcagtaaaaagaccaactacctggtccaagggcgggacagcggtgtctccaagctcgaa
aaggctgaaagctttggtaccaagatcttagatgaagatggtctgtttgagctcatcaga
acaaagcctgggaagaagtcaaagtatgaaattgctgcagaggctgaggctaaagcttct
aagactagaactccatcctctcaagcaaagagcacccccaaatcccagaagatctctccc
tctaaaggcaactccagatctcctcagactcccagtccttctaaaaccagtttgtccaag
gcccatagtgcccgggtgggccagtcgggcacaccctctgggagaggttctgggcagact
gcccggagagatctgggtctgtcatcatcatcatcatcttctaaacatccttcgtctaca
tcagtatcaggggaaggagccagtttgctctgggtggacaagtatcgcccacgatctctc
aaaacagtcatcggtcaacagggtgaccagagctgtgcaaataaacttatgcgctggcta
caaaactggcacaaaaaccacagcgggggctcatccaaaccagcagttgcaaagtttggt
aaatttggaggaggaaaagacgatggctcttcatttaaagcagctctcctctctggacct
ccgggagtggggaagacgaccacagcagtactggtttgtgaggaactgggctacagctat
gtggagatgaatgccagctgtacgcgtagcaaaaacagtctgaaggaagttgttgcagag
tcactcaataacacaagcatcgaaaacttctataaaggcacatcacaaaaagtcagcagt
aaacatgtcctgattatggatgagatcgatggcatggcaggaaatgaagaccgagggggc
atacaggaaatgattggcctaattaaaacatcaaaggtccctataatttgtatgtgtaat
gatcgcaaccatcagaagattcggtccctcgcgaactactgttttgacctgcgtttccaa
agacctcgagtggaacaaataaagggggccatgatgtccatagctttcaaagaggggatc
aaaatccctcccccagctctcaatgaaattattcttgcatccaaccaggatgtccgacag
gtgctccataacctgagcatgtggtctgccaagaacaaagtgatgacttatgaccagtgc
aaatctgatgcagccaacgcccgaaaagacatgaagctgggtccatttgatgtgtgcaga
aaagtgttttcctctggagaggagacggctcatatgagtttaatcgacaagtctgacctc
ttcttccatgactactcactagcaccactctttgttcaggagaactacctccatgtgcgc
cctgcagcagcagctggtgatctcaaatcacacttggtgttgatcagtaaaacagcagac
tccatctgtgatggagaccttgttgacaggatgatacgttctcgtcagaattggtcactg
ttgcccacgcaggccatttatgccagtgtgttaccgggagaactgatgcggggttacatg
ggtcagttccccacttttcccagttggcttggcaaaaattcatccaccaataaacattcc
cgcattgtgcaggagctctcttctcacatgagtttaaagacgtactgcagcagacaggcc
gtgaacctggactatcttcactacttacggaaggcacttttgagcccccttcagaggcac
ggttcagagggagcagcacaggctgtgcagctcctggacgactaccagctcgtcagggaa
gacgtggacagcatgatggagatcagtgtctggggcggtcagcctgatccttactccaaa
ctggactctaaggtgaaggcagcatttacacgtgcatacaacaaagaggtccacctcact
ccatactctttacaagtggttaagaagggtcgacgcggaggaggtggaggaggtgacctg
gagctgggagaggacatggagactgaagttcgagagtcagaagatgagggagacaacctc
caaacagatgccatgatcaaacaaaagaaggcaaaagtcacaaaggaacctaaaaaagaa
aagactgaagtctctggtaaaggcaaaggaagagggaagggcaagattaaaaaataa
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integrated database retrieval system
