Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110165493
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Entry
110165493 CDS
T05002
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bpec03036
]
110165493 (dicer1)
Chromosome and associated proteins [BR:
bpec03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110165493 (dicer1)
microRNA pathway
RISC loading complex
110165493 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
AAA_16
dsrm
Motif
Other DBs
NCBI-GeneID:
110165493
NCBI-ProteinID:
XP_020786351
LinkDB
All DBs
Position
Unknown
AA seq
1860 aa
AA seq
DB search
MAGLQLVTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNSGSGK
TFIAVLLTKELSHQIRGHYDENAKRTVFLVNSAASVIHQAAAVRTHSDLQVGEYIDVEQT
SEWSDERWRQEIRENQVLVMTCHIFLHILKNKILPLSKINLVVFDDCHLAITEHPYCEVM
KLFEGCGSPRVLGLTASILNGKCDPLELEHKIQNLEQILKSNAETATDLVVLDRYASQPR
EVVLDCGPYVDRSGLSSRLQKELNEALHFLNDCNIPVSREDRDPTFISKQVLGDCQAVLQ
VLGPWCADKAAGIMVRELQKYIKHEQEELTRKFLLFTDTILRKIHALCEEHFSPASLDLK
FVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERPE
ANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRN
KQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKG
RARAPVSNYIMLADSERTKAFEEDLTTYKAIEKILRNKCSKSVEVGEFEVEQILDDDNIL
PPYVLRTEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETKDGRFQSTLFLPI
NSPLRAPVKGPVMNCARLAEKAVALMCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDE
EETSVPGRPGSTKRRQCYPKAIPVCLRDSYAVPGQTYYLYVIGMVLTTPLPDELNFRRRK
LYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTPGQLDLITRLHQ
YIFSHILRLEKPALEFKPVLADSAYCVLPLNVVGESNTLDMDFKFMEDIEKSEARTGIPT
TQYTKQTPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEY
YKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQ
ILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLIAEELRSQTATEAGVGSQTLPPDFRY
PNLDFGWKRSIDSKTYISCSESCEGDDEGHCNHQETETSDPPVNSDPQMNSDEPCTRNLT
NGTATVTPCDKGHPQEHLHPHDNCQRSQPSAAERASPESIQITTSVPVQPAPRSCPEDDC
TRRTSDLPDKATSVCPRALTAPCPAPAGDSPKSLGPNPGLILQALTLSNASDGFNLERLE
MLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDP
PVNWLPPGYVVNQDKSSTDKLNSDEPKEEVLSNGQPGMDSDDECEEEEEEELLMKDEPKD
EVNMEDELEYYKEHIRFIDNMLLGSGAFGKKISLSTFTPTPPPGPGPDSPYEWKTPKKPP
PHSSAHYQSESTHSGPSEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGAELGK
QSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERSILESR
PTSLLPSHHIQALDLGYGWLKIPPRCMLDHPHAQRTLLHLISGFENFEKKINYTFQNKAY
LLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNN
TIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDI
EVPKAMGDIFESLAGAVYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEP
ETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggccggccttcagctggtcactcccgcctcctcacccatggggccgttctttgggttg
ccatggcagcaggaggctatccatgataacatctacacaccaaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactatcgtctgcttgaattctggctcagggaag
acgtttattgcagtacttttaacaaaggagctctcccaccaaatccgtggacactatgat
gaaaatgcaaagaggaccgtttttcttgtgaactcagccgcatctgtgattcaccaggca
gcggcagtccgaacgcactctgacctccaggtgggagagtatattgatgtggagcagacc
tcagagtggagcgatgagcgatggagacaggagatcagagagaatcaggtgctggtgatg
acatgtcatatattcctgcacatcttaaaaaacaaaatcttaccgctgtcaaaaatcaat
ttggttgtatttgatgactgtcacctggctatcacagagcacccatactgtgaggtgatg
aagctttttgaaggctgtggaagccctcgtgtcctgggtctaacagcctctattctcaat
gggaaatgtgacccactggagctcgagcacaaaatacagaatttggagcaaatcctcaaa
agcaacgctgaaactgccacagaccttgttgtcttggaccgatatgcctcccagccaaga
gaggtggttctggactgtggcccgtacgtggacaggagtgggctctcgtcacgtctgcag
aaagagctcaatgaagcgctgcattttctcaacgactgcaacatcccagtgtccagagag
gaccgggaccccaccttcatttccaaacaggtgttgggagactgtcaggcggtactgcag
gtgctggggccctggtgcgcagataaagctgctggaattatggtccgcgaactccagaag
tacatcaaacacgaacaagaggagctgacgagaaaattcctcctcttcacggacaccatc
ctccgaaaaatccacgctctgtgcgaagaacatttctcccccgcctccctagacctcaag
tttgtcacgcccaaagtactgagactgctggagatcctacacgaatacaagcctttcgag
agacagcagtttgagagtgtggagtggtacaataatcgtaaccaggataattacgtgtcc
tggagcgactcggaggatgaggacgaggatgaggaggtggaggccaaagagagaccagag
gcgaacttcccctcgcccttcacaaacatcctgtgtgggatcatctttgtggagaggaga
tacacagctgtggtcctaaaccgtcttatcaaagaggcgggcaaacaggaccccgagctc
gcctacatcagcagcaacttcatcacaggccacagcatcggcaagaaccagcctcgcaac
aaacagatggaagtggagttcaggaagcaagaggaggttctccgaaagttcagagctcat
gagaccaacttgctgatcgctaccagtatcgtggaggagggcgtagacatccccaagtgt
aacctggtggtgcggttcgacctgccaacggagtacaggtcctacgtccagtccaaagga
agggcccgggcacctgtgtccaattacatcatgttagcagacagcgaaagaaccaaggct
tttgaggaggatctcaccacttacaaggccatagagaagatcttgagaaacaaatgctca
aagtcagtggaagttggagagtttgaagtggagcagattctggacgatgacaacatcctc
cctccgtatgtgctgcggactgaagacggagggcccagggtcaccattaacacggccatc
gggcacatcaacagatattgtgcgaggctgcccagtgaccctttcacacacttggctccc
aaatgtaaaacagtagagacaaaagatgggcgcttccaatcaactctgtttttacccatc
aactcccctctccgtgccccagtgaagggccctgtgatgaactgtgctcgactggcagag
aaagctgttgcattgatgtgctgtgagaagcttcacaaaataggggagctggatgatcac
ctgatgcctgtggggaaggagactgtgaagtatgaagaggagctggaccttcatgacgaa
gaggagaccagtgtcccagggcgacccggctccaccaagaggaggcagtgttacccaaaa
gccataccagtgtgtttgagagacagttatgctgtgccaggacagacctattacctgtat
gtgattgggatggtcctaacgacacctctgcctgatgagttaaacttcaggaggaggaag
ctgtaccccccagaagacaccaccagatgttttgggatcctcaccgccaaacctatacct
cgaatccctcatttccctgtgtacactcgctctggagaggtgaccatctccatcgagctg
cagaagtccggcttcactctgaccccggggcagttggatctgatcacgaggctgcatcag
tacatcttctcccacatcctgcgtctggagaaacccgccctcgagttcaaacctgtactc
gccgactctgcttactgcgttctacctctgaatgttgttggtgagtccaatactctggat
atggactttaagttcatggaggacatagaaaagtctgaggcgcgcactggcatccccact
actcagtacaccaaacagacccccttcaccttcaaactggaggactaccaggatgccgtc
atcattccaaggtatcgtaactttgaccagcctcatcgcttctacgtggccgatgtgtac
acagacctaacacccctgagtaagttcccttcaccagagtatgagacatttgcagagtat
tacaaaaccaagtacaacctggacctatccaacctcaaccaaccactgctggatgtggac
cacacctcctccagattaaacttgttaacccctcgacatctgaaccaaaaaggcaaagct
ctgcccctgagcagtgcagagaagagaaaggccaaatgggagagtctgcagaacaaacag
attttggtccccgagctctgtgccatccaccccatccccgcgtccctgtggaggaaggca
gtgtgtctgcccagtatcctgtaccgcctccactgcctcctcatcgcagaagagctgcgc
tctcagactgccactgaggctggggtgggctcccagactctgcccccagacttcagatat
ccaaacctcgattttggctggaaaagatccattgacagtaagacgtatatctcctgttct
gagtcatgtgagggagatgacgaaggtcactgtaatcaccaagaaactgaaacctccgac
cctccagtgaactctgaccctcagatgaactctgacgaaccctgcaccaggaacctaaca
aatggcactgccaccgtcaccccgtgtgacaaaggccacccacaagagcaccttcaccca
catgacaattgccaacgctcccagcccagcgccgctgagcgggccagccctgaatcaata
caaatcactacctcagttcctgtgcagcccgctcctcgctcctgtcctgaagatgattgt
acccggaggacctcagatctcccagataaagctacctcagtctgcccccgggccctcaca
gcaccttgtcctgctccggcaggagactctcccaaaagcctggggcccaacccggggctc
atcctgcaggccctcaccctgtccaacgccagcgacggcttcaacctggagcggctggag
atgctcggagactcttttctgaagcatgccatcaccacatacctgttctgcacctacccc
gatgcccacgaggggcgcctcagctacatgcgcagcaagaaggtgagcaactgtaacttg
taccgcctggggaagaagaagggcctgcccagtcggatggtggtgtccatctttgacccc
cctgtgaactggctgccccctggatacgtggtcaaccaggacaagagcagcaccgacaaa
ctgaactcagacgagcccaaagaggaggtcctgtccaacggtcagcccgggatggactct
gacgacgagtgtgaagaggaggaagaggaggagctgctgatgaaggacgagccaaaggac
gaagtcaacatggaggacgagctcgagtactacaaggagcacatcaggtttatcgacaac
atgcttctgggctccggcgcctttggcaaaaagatctctctgagcaccttcacccccacc
ccccctccaggccccggccctgactccccgtacgagtggaagacccccaagaagccccct
ccccacagctccgcgcactaccagtccgagtctacccacagcggcccatccgaggaattc
gactacagctcctgggatgccatgtgctacctggaccccagtaaggcgggagaagaggac
gatttcgtggtgggcttctggaacccctcggaggagaactgtggagcggagctggggaag
cagtcgatttcgtacgatcttcacacagagcagtgcatcgcggataagagcatagcggac
tgtgtggaggcgctgttggggtgctacctgaccagctgtggagagagggcagcccagatg
tttctgtgctcactgggcctcaaggtgctaccactggagaggagcatcttggagagccgc
cccacctccctcctcccctcccaccacatccaggctctggacctgggctacggctggctc
aagatccccccgcgctgcatgctggaccacccccacgcccaacgcaccctcctccacctc
atctccggcttcgagaactttgagaagaagatcaactacacatttcagaataaggcctat
cttttgcaggccttcacccacgcctcctaccattacaacaccatcacagattgttaccag
cggctggagtttcttggcgatgcaatcctagactacctcataactaagcacctttatgaa
gatccacggcagcactcgcccggcgtgctcacagacctgcgatccgccctcgtcaacaac
accatctttgcctctctggccgtgaagtacgactatcacaagtacttcaaggccatctcc
cccgaactgttccacgtcatcgatgacttcgtgcagtttcagctcgagaagaacgagatg
caagggatggactctgagctgcggcgctccgaggaggacgaggagaaagaggaggacatc
gaggtgcccaaagcgatgggggacatctttgagtctctggccggagccgtttacatggac
agcggcatgtccctggagactgtgtggcaggtgtattatccaatgatgaggccacttata
gaaaaattctctgccaatgtgccacgctctcccgtgagagagctgctcgagatggagcca
gaaactgccaagttcagccctgcagagaggacctacgacggaaaagtgcgcgtgacggtg
gaggtcgtggggaagggcaagttcaagggcgtggggcggagctaccgtatcgccaagtcc
gccgccgcccgccgtgccctgcgcagtctcaaagccaatcaacctcaggtccaaaacaac
tga
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