KEGG   Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110166013
Entry
110166013         CDS       T05002                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bpec  Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bpec00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110166013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bpec03041]
    110166013
Spliceosome [BR:bpec03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    110166013
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_1st PRP4 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_EIPR1 Ge1_WD40 Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_WDR19_1st WD40_like Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 110166013
NCBI-ProteinID: XP_020786871
LinkDB
Position
Unknown
AA seq 504 aa
MSDEDEAPLVKKTRVFYGSLEDKERERLSAESGSKPGPGSGVQAGIQAGNINISSGEVLE
VEERVERQQEVLEEFERRRRARQITVSTDDTEVKAGLRALGEPITVFGEGPADRRERLRS
VLSVVGPDALKKSRKDEERGRRSHEECSQTWYHEGPASLQEARLWLAHYSLPRAMRRLEN
ARLQRDVSDATKATKQQELHKGLRNLNNFCSQIGDDRPISFCHFSPDSKVLATASWSGLC
KLWSVPDCNLIRTLRGHNTNVGAIVFRPNATNSSDVSLASCAADGTVKLWNMESDEPVAD
IEGHSERVPRVAWHPSGRFLGTTCYDSSWRLWDLEVQEEILHQEGHSKGVHDLHFHPDGS
LTATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVNFSPNGHHLATGSADNTCKVWELRN
RRCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWTHPGWMPLKTLAGHEGKVMGL
DISADGKLIATCSYDRTFKLWMSE
NT seq 1515 nt   +upstreamnt  +downstreamnt
atgtctgacgaagacgaggctccgctggtgaagaagactcgggttttctatggaagcctg
gaggacaaagagcgagagagactcagcgccgagtccgggtctaaaccaggacctgggtcc
ggggtccaggccgggatccaggccgggaacatcaacatctcctcaggggaggttctggag
gtggaggagcgggtggagcggcagcaggaggtgttggaggagtttgagaggaggaggaga
gcgaggcagatcaccgtctccaccgacgacactgaagtcaaagctggactcagagccctg
ggagaaccaatcactgtgtttggagaaggaccagccgaccgcagagagaggttgaggagt
gtactttctgttgttggacctgacgctctgaagaaatcccgaaaagacgaagagagaggt
cgaaggtcacacgaagagtgcagtcagacctggtaccacgaaggccccgcctctttacaa
gaagctcgtctgtggttggctcattactctctgcccagggcgatgaggcgtctggaaaac
gctcggctgcagagggacgtctcagacgcaacaaaagccacaaaacaacaagaactacac
aaaggactcagaaacctgaataacttctgcagtcaaatcggagacgatcgtccaatcagc
ttctgccatttcagccccgactccaaagtcctcgccacagcgtcctggtctggtttgtgt
aaactctggtctgtccccgactgtaacctgatccgcacactcagaggtcataacacaaac
gttggtgcgatcgtgttcagaccgaacgccacaaactcgtctgatgtgagtctggcctcg
tgcgccgccgacggaaccgtcaaactgtggaacatggagagtgatgagccggtggccgac
atcgagggccacagcgaaagagtgccccgtgtggcctggcacccgtcaggacgcttcctg
gggaccacgtgttacgacagctcgtggcgtctgtgggacctggaggttcaggaggagatt
cttcatcaggagggacacagtaaaggagtccacgacctgcacttccacccagacggctcc
ctcacagcaacagggggtctggacgcgttcgggcgggtgtgggacctcaggaccggtcgt
tgtgttgttttcctcgagggacacctcaaagaaatctacagtgtcaacttctcccccaac
gggcatcacctggccacaggaagtgccgacaacacctgtaaagtttgggagctgaggaac
cggcgctgcctgtacacggtccccgcccaccagaacctgctgtcggccgttcgcttccaa
ccgactgacggtcacttcctgttgaccggagcctacgacaacacggccaaagtgtggacg
cacccgggatggatgcccctgaagacgctggcgggacacgaaggaaaggtgatgggttta
gacatttcagccgacgggaaactcatcgcgacgtgttcctacgatcgaaccttcaaactc
tggatgtctgaatga

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