Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110166139
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Entry
110166139 CDS
T05002
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110166139 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpec03041
]
110166139 (ddx5)
03009 Ribosome biogenesis [BR:
bpec03009
]
110166139 (ddx5)
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110166139 (ddx5)
Spliceosome [BR:
bpec03041
]
Complex A
U1 snRNP components
U1 related factors
110166139 (ddx5)
Complex B
110166139 (ddx5)
Ribosome biogenesis [BR:
bpec03009
]
Eukaryotic type
Pre-60S particles
Helicases
110166139 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BNIP2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110166139
NCBI-ProteinID:
XP_020786997
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGGPPRFGGGTGGNRGGPPMGKFGNPGERLRKKHWNLDELPKFQK
NFYQEHPDVTCRPLQDVEQYRRSKEVTVKGRDCPKPIMKFNEAAYPSYVMDIIVKQNWTE
PTPIQSQGWPVALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPT
RELAQQVQQVAAEYGQPSRLRSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK
TNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDRQTLMWSATWPKEVRQLAEDFLKD
YVQINIGALQLSANHNILQIVDVCNDLEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDE
LTRRMRRDGWPAMGIXXXXSVPFLEFRYGKAPILIATDVASRGLDVEDVKFVINYDYPNS
SEDYIHRIGRTARSQRTGTAYTFFTPNNMKQASDLISVLREANQAINPKLIQMAEDRGGR
GRGGRGGYKDDRRDRYSGGGRNYGGSNYRDGDRGFGNGLKSAFGGNKAQNGGNFGGNGGN
SGSFGSSNYSNGNGHSNFGAPPNQPGPFGNQNFQGPPQFGAMQRPAQNGMNHPPFPFPAQ
APQPPPPMAPYPMQPPFPQ
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttcagacagagaccgcggcagggacagagggtatggtggaggccctcct
cgttttggtggtggtacaggtggaaacagggggggacctccaatgggaaaatttggcaac
cctggagagaggctgcgaaaaaagcactggaacttagatgagcttccaaaatttcagaag
aacttctaccaggagcatccagatgtcacatgcaggccattacaagatgttgagcaatat
agaagaagcaaagaagttacagtcaaaggcagagattgccccaaaccaattatgaaattc
aatgaagcagcatatccaagttatgtcatggacataattgtcaaacaaaattggactgaa
ccaactccaattcagtctcaaggttggccagttgccctcagtggcaaagacatggtcggt
attgcacaaacagggtctggaaaaacactggcatatcttcttccagcaattgtgcacatc
caacatcaaccatttcttgagcacggtgatgggccaatatgtttagtgctggccccaact
cgtgaactggctcagcaggtgcagcaagtggctgcagagtacggccaaccatctcgtctc
aggagcacatgcatctacggaggagccccgaaaggtccacaaattagagaccttgaacga
ggtgtagagatttgtattgctaccccaggtcggcttatagactttctggagtgtggcaaa
accaatctccgccgctgcacatatctggtgcttgatgaagctgaccgcatgctggatatg
ggatttgagcctcaaattcgcaagatagtcgagcagatcagaccagaccgacagacactg
atgtggagtgccacatggcctaaagaggttagacagcttgctgaggatttccttaaagac
tatgttcagatcaacataggagccctgcagctcagtgcaaatcacaacattctacaaata
gtggatgtgtgcaatgacttggagaaggaggacaaactgatccgattacttgaggagatc
atgagtgaaaaagagaacaagaccattatttttgtggagaccaaacgacgatgcgatgag
cttaccaggcggatgagaagagatgggtggccagccatggggattcnnnnnnnnntgtct
gttccctttttagagttcagatatggaaaagctccaatcctcattgctactgacgtggct
tcccgaggcctagatgtggaggatgtgaaatttgtcatcaattatgactaccccaactcc
tctgaggattatatccatcgtattggacgcacagcccgcagtcaaagaacgggcacagcg
tatacgttcttcacccccaacaacatgaaacaagccagtgacctcatctctgttctccgt
gaagctaaccaggccattaatcccaaactgattcagatggcagaagacagaggaggtcga
ggaagagggggtagaggtggctataaggatgaccgccgcgataggtattctgggggcggg
agaaactatggggggagtaattacagagatggtgatagggggtttggtaatgggctgaag
agtgcctttggtggtaacaaggctcaaaatggtggcaactttggtggaaacggtggaaac
tctggtagttttggaagcagcaattacagtaacggtaacggacacagtaattttggggca
ccaccaaaccaaccaggtccttttggtaaccaaaacttccaggggcctccgcagtttgga
gccatgcagaggcctgctcagaatggcatgaaccaccctcccttccctttccccgctcaa
gccccacagccaccaccaccaatggcgccctaccccatgcaaccaccttttccacagtaa
DBGET
integrated database retrieval system
