Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110166482
Help
Entry
110166482 CDS
T05002
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110166482 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bpec03041
]
110166482 (ddx42)
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110166482 (ddx42)
Spliceosome [BR:
bpec03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110166482 (ddx42)
Complex B
110166482 (ddx42)
Complex C
U2 SnRNP specific factors
110166482 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
110166482
NCBI-ProteinID:
XP_020787387
LinkDB
All DBs
Position
Unknown
AA seq
899 aa
AA seq
DB search
MNWNKGGQGVKRGFGFGGFVLGGKKDEPQLPHKSHTSFGGSGSGGGYGKNQQMPSFYKIG
TKRANFDEENAYFEDDEEEAGNNVDLPYIPAENSPTRQQMKSGGGSDSEDDPLDAFMAEV
ESQAARDMKKLEEKEKENPDKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDYD
SDGNPIPSTTKKIIMPLPPIDHSEIDYPPFEKNFYQEHEELSTLTGMQVIELRQKLNLRV
SGAAPPKPCTSFAHFSFDEQLMHQIRKSEYTQPTPIQCQGIPIALSGRDMIGIAKTGSGK
TAAFIWPMLVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYGG
GSMWEQSKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVRS
IASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQMVEMLPTPSD
KWAWLTRRLVEFTSSGSVLIFVTKKANSEELATNLTQEGYSLGLLHGDMDQSERNKVISD
FKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLT
SKDTSFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYKER
PGLGAESSGGGSSSSVMSSSYEGYSKPTTGAMGDRIAAMKQAFQAQYKSHFVAATGNAPK
LSTKSSSTSGWTSAGSLSSVPTEAASSPKMSGFTSAGTLSSIPNIQPSVQPSPQPFYPPP
PPKDSSRDRYGDDRGRHGDDRGRHSDSHHRHSDRGHGDDRYSSRDRYGDSDRDRDRHGDR
DRHSSSSSSRHSDSRHSDSRNGDGSRRDREERRSDRDGDRDDGFAVPEPPKKRKSRWDN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaagggcggccaaggtgtcaagcgagggtttgggtttggaggatttgtc
cttggaggtaaaaaagacgaacctcaacttccacacaaatctcacacatcatttgggggt
tcaggatctggtggaggatatggcaaaaaccagcagatgccatccttctacaaaatagga
actaaacgagccaactttgatgaggaaaatgcctattttgaagatgatgaagaggaggcc
ggcaacaatgtggatctgccctatatcccagcagagaactctcccacacgccagcagatg
aagtctggtgggggttcagacagcgaagatgaccctttggatgcatttatggcagaagtt
gagagccaagctgcaagagatatgaagaaactggaggaaaaggagaaagagaaccctgac
aagggtattcgtgatgacattgaagaggaggatgaacaagaagcttatttccgttacatg
gcagagaatccaaccgcagggctaacacaggaggaagaggaggaaaatattgactatgac
agtgatggaaacccaattccctctaccactaagaaaatcatcatgcctcttccacccatt
gaccactcagagatcgattatcctccgtttgagaaaaacttttatcaagaacatgaggag
cttagtaccctgactggaatgcaggttatagagctcagacaaaaactgaatttgagggtt
tctggagcagcccctccaaagccgtgcactagctttgcccattttagctttgatgaacag
ctgatgcaccaaattcgtaaatctgaatacacacaaccaacgccaattcagtgccagggc
atacccattgcattgtctggccgtgacatgattggtattgcaaaaactggcagtggaaaa
acagcagccttcatttggccgatgttggttcatattatggaccagaaggaactagagcct
ggcgagggtcccattgcagtcatcgtctgcccaacaagagagctttgtcagcagattcac
gcagagtgtaaacgttttgggaaagcctactcattacgatcagtggcagtttatggaggc
ggaagcatgtgggagcagtccaaggctctgcaggaaggagcagaaatagttgtatgcact
ccgggtcgtctcatcgaccatgttaaaaagaaggccacgtctctacagagggtcacatat
ctggtatttgatgaggctgatcgcatgtttgatatgggctttgaataccaggttagatct
attgccagccatgtgcgtccagacagacaaacccttcttttcagtgctacttttcggaag
aagatcgagagactggccagagacatcctggtagatccaattcgcgttgtgcagggagac
attggagaggctaatgaggatgttactcaaatggtggagatgttgcccactccttctgat
aagtgggcctggctgacacggaggctggttgagttcacgtcctcgggctcagtcctcatt
tttgtcacaaagaaagcgaactctgaagaactggccacaaatcttacccaggagggctac
agtctgggcctacttcacggtgacatggaccagagcgagaggaacaaggtcatttctgat
tttaagaagaagaatctgcctattctggtagccactgatgtagcagctcgtggtctggac
atcccctctattcggactgtggtgaactatgacgtggcccgggacattgatacacacaca
cacaggattggtcgaacgggtcgtgcaggagagaagggcgtggcttacactcttctcacc
agcaaggacacttcatttgctggtgacctggtacgaaatctggagggagccaatcaggct
gtctccaaggagttgatggatttagccatgcagaatccctggttcagaaaatccagattt
aagggtgggaaagggaagaagttgaacattggtggaggtggtcttggttacaaagaaaga
ccaggcctaggagctgagagttcaggtggtggaagcagcagcagtgtcatgtctagtagt
tatgaaggctacagcaaaccaactacaggagctatgggagatcggatagctgcgatgaaa
caggctttccaggctcagtacaagagtcactttgttgctgctaccggtaatgctccaaaa
ctcagcacaaagtccagcagtacctcaggctggaccagcgcgggcagcctcagctctgtg
ccaacagaggccgccagcagtcccaagatgtctggcttcaccagcgctggcacacttagc
tccatccccaacatccaacccagtgtccaaccaagcccccagcccttttacccccctcca
ccccccaaagacagctcccgggacaggtatggggacgatcgtgggcgccatggagacgac
cggggacgtcacagcgacagtcaccatcgccacagtgacagaggccatggtgacgatcgc
tacagtagcagggatcgttacggagacagtgacagggatagggaccgccatggagaccgg
gatcggcacagcagcagtagcagcagccgtcatagcgatagtcggcatagtgatagtcga
aatggagatggaagcaggagggacagggaggagaggaggagtgacagagatggagacagg
gatgatggttttgctgttcctgaaccacccaaaaagaggaaaagcaggtgggataactaa
DBGET
integrated database retrieval system
