Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110167686
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Entry
110167686 CDS
T05002
Symbol
exosc3
Name
(RefSeq) exosome complex component RRP40
KO
K03681
exosome complex component RRP40
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110167686 (exosc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110167686 (exosc3)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
110167686 (exosc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP40_S1
KH_6
RRP40_N_mamm
Rrp40_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
110167686
NCBI-ProteinID:
XP_020788710
LinkDB
All DBs
Position
Unknown
AA seq
244 aa
AA seq
DB search
MLSALKERVGQVLLPGDEFVCEAEDTLSLSATARKDTAVCGPGLRRSGDRVLVCVSGHLR
HKAPNVFWIQSQSKRYVPAKGECVIGIVTAKSGDVFKVDVGASELASLSYLSFEGATKRN
RPNVQVGDLVYAQFLVANKDMEPELVCIDGAGRANGLGVFGSGGLMVKVSLGLVRRLLAP
GSDLMADLAGLFPSEMVLGLNGRVWVKSSSLQQTLILTNLLQSCETLSPDQRRALFHRVK
QGTL
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccgcgctgaaggagagggtgggacaggtgctgctccccggggatgagttcgtg
tgcgaggccgaggacacgctctctctgtcggccacggcgcgtaaagacaccgcggtgtgt
ggaccggggctgcgcaggagcggagaccgggttctggtgtgtgtgagcgggcatctgcgc
cacaaggcccccaacgtgttctggatccagtcccaaagcaaaaggtacgtcccggcgaag
ggggagtgtgtgatcggcatcgtcacggcgaagtccggagacgtgttcaaggtggacgtg
ggcgcgagcgagctggcgtcgctgtcctacctgtccttcgagggcgccaccaagaggaac
aggcccaacgtgcaggttggagatctggtctacgctcagttcctggtggcaaacaaagac
atggagccggagctggtctgtatcgacggggctggacgcgcaaacggacttggcgtgttc
ggatctggaggactcatggtcaaagtgtctctgggactcgtgcgcagactcttggccccg
ggcagtgacctgatggccgacctcgctggactcttcccctccgagatggttctgggtcta
aacgggcgagtctgggtcaaatcctcgagcctccagcagacgctcatcctcaccaacctg
ctccagagctgcgagacgctcagccccgaccagaggagggcgctcttccacagggtcaag
caggggacgctatga
DBGET
integrated database retrieval system
