Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110168522
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Entry
110168522 CDS
T05002
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110168522 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpec03021
]
110168522 (polr1b)
Enzymes [BR:
bpec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110168522 (polr1b)
Transcription machinery [BR:
bpec03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110168522 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Radial_spoke
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
Motif
Other DBs
NCBI-GeneID:
110168522
NCBI-ProteinID:
XP_020789618
LinkDB
All DBs
Position
Unknown
AA seq
1254 aa
AA seq
DB search
MSADESEQHGAESHASAAALKAFLLKPSTKTNTNLYDHLTEVLVKILDERPLDAVDVLED
ISRDVKRSRYVDKQSTLRDLRGQSPAETLAEQQRALFDRQEEHEQEDELVEPALPNLSEV
GFYLEQLGVGLGREELQRVFLSLKQLVETHALPRCRFWGKILGTENSYIVAEAEYREGEE
DEEHSAEEGFEERDNEEKEDTEDLLPQSMYKPPPVVPTEALGTGTNKYVYYVCKEPGFPW
TRLPAVTPAQITAARLIKKFFTGRLDAPIESFPPFPGNEANYLRAQIARISGGTQVSPKG
FYHFKEEEGNEEDEVTQDTYEADPEFEGLPAVKLSESLSAWVHHTQHILEQGRCTWVNLT
SKAEEQNEEGEEEREEESEEAEPELGPPLLTPLSQDIELCGICVFMVAISPSRFRVLKAT
AANLANKKYFYSVLPVLCVSILNPLLVLSECICIHLKSDAEKFYLLCLMARKLFTFAKQE
CMEENPDSLMCQEVMTPGQLYLMFTKERLTSWLVSVKMAMDKRGHRLNSGWTSENMMKIL
NMGTDVTKAFEYLLATGNLVSRTGLGLLQGTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTSTCSIVTQTQPTTGLPALLCSLGMT
PVDGSPGQPYSDCYPVVLDGAVVGWVEAQLAPVVVESLRRFKVLQEKRIPAWTEIVLVPQ
TGKASLYPGLFLFTTPCRMMRPVRNLALGKEELIGTFEQLYLNVGILEGEIEAGVTSHQE
LFPHTMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFLNRSDNKLYRLQTPQSA
LVRPYMYDHYNLDNYPSGTNAVVAVISYTGYDMEDAMIVNKSSWERGFAHGCIYKTEVVD
LCDKVRGEDAVVFGTKPGDPKNTDKLDPDGLPFIGSTLQYGDPFYGYINLNTGQSFTTFY
KNQESGVVDNIKICSNDLGTGHFKRVCITIRIPRNPTIGDKFASRHGQKGILSRLWPTED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLSHDATPFTFSEENSALEY
FGEMLKAGGYNYYGTERMYSGVSGLEMEADIFIGVVYYQRLRHMVSDKFQVRTTGTRDKI
TNQPVGGRNIQGGIRFGEMERDALLAHGSSFLLHDRLFNCSDRSVAQICVDCGSLLSPLL
EKPPPHWSFTKHRKTVCTLCGKSESIDTVSVPFVFRYFVAELAAMNIKVKLDVK
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggatgagtcggagcagcacggcgcggagagtcacgcttcagccgcggcgctc
aaagcttttctcctcaagcccagcaccaagaccaacaccaacctgtatgatcacttgacc
gaggtgctggtgaagatcctggatgagcgccccctggatgcggtggacgtgctggaggac
atcagcagagacgtgaagcgctctcggtacgtggacaaacagagcaccctgagggacctg
agaggacagagccccgcggagacactcgccgagcaacagagagcgctgttcgaccgccaa
gaggagcacgagcaggaggacgagctggtggagcccgcgctgccgaacctgagtgaggtg
ggcttttacctggagcagctgggcgtgggcctgggccgcgaggagctgcagagggtgttc
ctgtccctgaagcagctggtggagacgcacgctctgccccgctgtcgattctgggggaag
atcctggggacagagaacagctacatcgttgcggaggccgagtacagagagggagaggag
gacgaggagcacagcgccgaggagggatttgaagagagagacaatgaagagaaagaagat
acagaggatcttcttcctcagtcgatgtacaaacctcctccggtcgtccccaccgaggcc
ctcggcacaggcacaaacaaatacgtgtactatgtgtgtaaagagccgggcttcccgtgg
accaggctccccgcggtcactccggctcagatcaccgccgcgcgcctcatcaagaagttc
ttcaccgggagactggacgctcccatcgagagcttcccgcctttccccggcaacgaggcc
aactacctgagggcccagatcgctcgcatctccggagggacacaggtgagtccaaagggt
ttttaccactttaaagaagaggaggggaacgaggaggacgaggtgacccaggacacttac
gaggcggacccagagttcgaggggctcccggccgtcaaactgtccgagtctctgtccgcg
tgggtccaccacacgcagcacattctggaacagggtcgctgtacgtgggtgaacctcacg
tcaaaagcagaagaacagaacgaggaaggagaggaggagcgagaggaagagtcagaggaa
gcagagcctgagctggggcctccactgctcacacctctgtcccaagacatagagctttgt
ggaatttgtgttttcatggtcgcgatttctccgagcaggtttagggtcctgaaggccacc
gcggctaacctcgctaacaagaagtatttttattccgtacttcccgtactttgtgtctcc
atcttaaatcctcttctcgtcctcagcgagtgcatctgcatccacctgaagtctgacgcg
gagaagttctacctgctgtgtctgatggcgcggaaactgttcacgttcgccaaacaggag
tgtatggaggaaaaccccgacagcctcatgtgtcaggaagtgatgaccccagggcagctc
tacctcatgttcaccaaggagcgtctgacctcgtggctcgtctcggtgaagatggcgatg
gataaaagaggacacaggctcaactcgggctggaccagtgaaaacatgatgaagatcctc
aacatgggaactgacgtcaccaaagcctttgagtatctgctcgccaccggaaacctggtc
tccaggacgggtctggggttgctgcagggcactggtctctgcgttgtggccgacaaactg
aacttcatccggtacctgtctcacttccgctgtgtgcacagaggagccgccttcgccaaa
atgaggaccacgacggtgcgaaagcttctgccggagtcctggggcttcctgtgcccggtg
cacacgcccgacggagagccctgcggcctcatgaaccacatgacctccacctgcagcatc
gtcacgcagacccagcccaccacaggcctgcccgctctgctctgctcactcggtatgact
ccagtggacgggagccctggtcagccgtactcagactgttaccctgtggtgctggacggg
gctgtggtcgggtgggtcgaggctcaactcgctccagtcgtggtcgaatctctgagacgt
ttcaaggtgttgcaggagaagcggatcccggcctggacagagatcgtcctggtccctcag
acgggaaaggccagtctgtatccggggctgttcctgttcacgacgccgtgtcgaatgatg
aggcccgtcagaaacctggctctgggcaaggaggagctcattggaacatttgaacagctg
tacttaaacgtgggcatcctggagggtgagatcgaggccggcgtcacgtctcatcaggag
ctgtttcctcacacgatgctcagtgtcgtcgccaacttcatcccgtactccgaccacaac
cagagcccccgcaacatgtaccagtgtcagatgggtaagcagacgatgggcttccctctg
cactcgttcttgaatcgctctgataataaactgtaccggctgcagactccacagagcgcc
ctggtgagaccgtacatgtacgaccactacaacctggacaactaccccagcggcaccaac
gctgtcgtggccgtcatctcctacaccggctacgacatggaggacgctatgatagtgaat
aagtcttcctgggagcgcggttttgcacatggctgcatctataaaacggaggtggtggat
ctgtgtgataaagttcgaggggaggacgctgtggttttcgggactaaacctggagacccc
aaaaacacggacaaactggacccggacggactgcccttcatcggctccacgctgcagtac
ggagaccctttctacggctacatcaacctcaacacgggccagagcttcaccaccttctac
aaaaaccaggagtccggtgtggtggacaacatcaaaatctgcagcaacgacctgggcacc
ggccacttcaaacgcgtctgcatcaccatccggatcccgcgaaaccccaccatcggagac
aagttcgccagtcgccacggtcagaagggcatcctgagccgcctgtggcccaccgaggac
atgccgttcaccgagagcggcatgaccccggacatcctcttcaacccgcacggcttcccc
tccagaatgaccatcgggatgctcatcgagagcatggccgggaagtccgcagccctgcac
ggtctgagccacgacgccacgcctttcaccttttccgaggagaattctgctttggaatac
ttcggggagatgctgaaagctggaggatacaactactacggcacggaaagaatgtacagc
ggtgtgagcggcttggaaatggaagcggacatctttatcggagtggtttactatcaaagg
cttcggcacatggtctcggataaattccaagtccggacgacgggaacgagggacaaaatt
accaaccagccagtcggaggcaggaacatccagggaggaatccggttcggggagatggag
agagacgcgttactggctcacggttcgtccttcctccttcacgaccgtctgtttaactgt
tcagatcgctccgtcgctcagatttgcgtcgattgcgggagcctcctgtcgccgctgttg
gagaaaccgcctccccactggtcgttcacgaagcacaggaaaaccgtgtgcacgctgtgt
gggaagagcgagtccatcgacaccgtgtccgtgcccttcgtgttcagatattttgtggcg
gagttggcagccatgaatataaaggtcaaattagatgtgaaataa
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