Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110168847
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Entry
110168847 CDS
T05002
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03015
mRNA surveillance pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110168847
09123 Folding, sorting and degradation
03018 RNA degradation
110168847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110168847
03041 Spliceosome [BR:
bpec03041
]
110168847
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110168847
mRNA cycle factors
Stress granule specific factors
110168847
Spliceosome [BR:
bpec03041
]
Complex C
Other components
Complex C specific factors
110168847
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_5
RRM_occluded
RRM_10
RRM_3
YflT
ApbA_C
Motif
Other DBs
NCBI-GeneID:
110168847
NCBI-ProteinID:
XP_020789993
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AEMGARAREFTNVYVKNFGDDVDDEKLRELFSQFGNALSIRVMTDATGKSRGFGFVSFER
HEDAQKAVDEMNGKEFQGRPIYVGRAQKKMERQTELRRRFEQMKQDRMTRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMATIPQAQNRA
AYYPAAGQMAQLRPSPRWATQNVRPQHFQSMPTAVRAAPPRPQTFGAMRPTAQIPRMISA
QRVATQPMAPRPAAAAPSAAPVRGVPQYKYSAGVRNPQQHMTPTQVGMPQAAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQNMHLSLAGKITGMLLEIDNSELLHMLESPESLR
SKVDEAVAVLQAHQAKEAVQKTVTNTAVAASV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgctcctagttaccccatggcttctctctacgtcggggacctgcatacg
gatgtgaccgaggctatgctgtacgagaaattcagcccagctggagccatcctctctatc
cgggtctgcagggacatgatcactcggcgctccctcggatacgcctatgtcaacttccag
cagcctgcagatgctgagcgtgcgctggacactatgaactttgatgtaatcaaggggcgt
ccggtgcgcattatgtggtcccagcgtgacccgtcattgagaaagagtggtgtaggaaat
atcttcattaagaatcttgacaagtcaattgacaacaaggctctgtatgacaccttctct
gctttcggcaacatcttgtcatgcaaggttgtttgtgatgaaaatggctccaagggctat
ggctttgtgcattttgagactcatgaggcagccgagcgtgccatagagaaaatgaacggc
atgctgctgaatgaccgcaaagtgtttgttggccgcttcaaatctcgcaaagagcgtgag
gctgaaatgggagcacgggccagagagtttacaaatgtctatgttaaaaactttggagat
gatgtagatgatgagaaactgagggagcttttcagtcagtttggaaatgctctcagtatc
cgtgtgatgacggatgccacagggaaatcccggggatttggatttgtcagctttgagagg
cacgaggatgcacagaaggctgttgatgagatgaatgggaaggagttccagggcagaccg
atctatgtgggacgagctcagaagaagatggagcgtcaaactgaactcaggcgtcgattt
gagcaaatgaagcaagacagaatgactagataccagggcgttaacttgtatgtgaagaat
cttgatgatggcatcgacgatgagcgtctgcgaaaagagttctctccatttggcaccatc
accagtgcaaaggtcatgttggaaggtggtcgcagtaaaggatttggttttgtgtgcttt
tcctcacctgaggaagccactaaagcagtgactgaaatgaatgggcgcattgtggccaca
aagccactgtatgtagctctggcacagaggaaagaggaacgacaggctcacctcaccaac
cagtacatgcagcgtatggccagtgtgcgtgctgttccaaacccagtcatcaacccctac
cagccagccccgccctctggatacttcatggccaccataccccaggcccagaatcgtgca
gcatattatcctgccgcagggcagatggcacagctgcgccccagcccacgctgggccacc
cagaacgtcaggccacagcacttccagagtatgcccactgcagtgcgggcggcgcctcct
cgccctcagaccttcggcgccatgcgtcccaccgcccaaatacctcgtatgatttcagcc
cagagagtcgccactcagcctatggcccctcgcccagccgcagcagcgccctctgctgcc
cctgtacgcggcgtccctcagtacaagtactcggcaggagtccgtaacccccagcagcac
atgaccccaacccaggtcggcatgccgcaggctgctgtccatgtgcagggccaggagccc
ctgaccgcctccatgttggctgctgccccgccccaagagcaaaagcagatgctgggagag
cgcctattccccctgatccagaacatgcacctgagcctggcaggaaagatcacagggatg
ctgctggagatcgacaactctgagctccttcacatgctcgagtctcctgaatctctgcgc
tcaaaggtggatgaggcagttgctgtgctccaggctcatcaggccaaagaagccgttcaa
aagactgtgaccaacacagctgtggctgcaagtgtttag
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