Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110168853
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Entry
110168853 CDS
T05002
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110168853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110168853
03036 Chromosome and associated proteins [BR:
bpec03036
]
110168853
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110168853
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110168853
mRNA degradation factors
5'-3' decay
Decapping complex
110168853
Chromosome and associated proteins [BR:
bpec03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110168853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
110168853
NCBI-ProteinID:
XP_020789999
LinkDB
All DBs
Position
Unknown
AA seq
479 aa
AA seq
DB search
MATARTENVGPVVMGLNKQNGQLRGQTKPSVQSAPAPGKTLSAPQKSSIPQESGGIKFGD
DWKKNLQLPPKDHRVRTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIA
LSGRDILARAKNGTGKSGAYLIPMLERIDLKKDHIQALVMVPTRELALQVSQICIQISKH
LGGVKVMATTGGTNLRDDIMRLDETVHIVIATPGRILDLIKKGVAKVDRVQMMIMDEADK
LLSQDFVVLIEDIISFLPKKRQILLYSATFPISVQRFMASHLQKPYEINLMEELTLKGIT
QYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQ
EYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGH
LGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHCEGDEGEEKHPQDTT
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaaacgttgggcctgtggtgatgggactgaacaaacagaat
gggcagctcagaggacaaaccaagccctcggtccaatctgccccagctccagggaaaact
cttagtgctccacaaaagagctccatcccacaagagtccggaggcatcaagtttggagac
gactggaagaagaacctgcaattgcccccgaaagaccaccgtgtcagaacatcggatgtc
acagccacaaaggggaatgaatttgaagattactgtctcaaacgagaactcctgatgggc
attttcgagatgggctgggagaaaccatcgcctattcaggaggagagcattcccatcgcc
ctttctggaagggacattttggctcgagcaaagaacggaacagggaaaagtggagcatat
ctcatcccgatgctggagcggatagaccttaaaaaggaccacattcaggcacttgtgatg
gtgccgacccgagagttggcgctgcaggtgagtcagatttgtatccagatcagtaaacat
ctgggcggagtcaaagtcatggcaacgaccggaggaaccaacctcagagacgacatcatg
cgtctggacgagactgtgcacattgtcattgccacccccgggaggatcctggatttgata
aaaaagggagttgcaaaagtggatcgagtccagatgatgatcatggatgaggcggataag
ctgctgtctcaggactttgtggttctcatcgaggacatcatcagctttctccccaaaaaa
cgtcagatcctgctctactctgccaccttccccatcagcgtgcagcgtttcatggcgtct
cacctgcagaagccctacgagataaacctgatggaggagctgaccctgaagggcatcact
cagtactacgcatacgtcaccgagcgccagaaagtgcactgcctcaacacgctcttctcc
aggcttcagatcaaccagtccatcatattttgtaactccactcaacgagtcgagctttta
gccaagaagatcactcagctgggctactcctgcttctatatccacgccaagatgatgcag
gaatacagaaatcgtgttttccatgactttagaaacggactgtgtagaaacctggtctgc
actgacctgttcactcgaggtatcgacatccaggcggtcaacgttgtcatcaactttgat
ttccccaaaaacgcagagacgtacctgcatcgaattggaagatctgggcgttttgggcac
ttgggtttggccattaacctgatcacgtcggaggatcgctttaacctgaaggccatcgag
gaccagctggtgacagacataaagcccatccccagcagcatcgacaagagtctgtacgtg
gccgagtttcactgcgagggcgacgagggcgaagagaagcatccccaggacaccacctaa
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integrated database retrieval system
