Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110169601
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Entry
110169601 CDS
T05002
Symbol
cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110169601 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110169601 (cnot1)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110169601 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110169601 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
110169601
NCBI-ProteinID:
XP_020790816
LinkDB
All DBs
Position
Unknown
AA seq
2389 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYKASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNVDLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMENSLAEFMQEVGYGFCASVDECRNIILQYPGREVTASQVARVLGMMART
HSGLADGIPLQSISAPGGGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFVIRDSKGLHIVVYGIQRGLGLEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFC
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFTFPIKHC
PDMLVLALLQISTSWHQLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSEMILTMIANCSSVMNKPRQPPPGVMPKVKHPSTGSLDAISPVQMDPLSGMGSL
SLGGTATSHTPSMQGFPTSLSSAFSNPQSPAKAFPPLSNTNPSTPFGGIGSLSAQLPGMD
SGPLGSGIGSGIGSSLGMPAVSTDPFSTRKMSTPGLNPPTFQQSKIKASDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDDVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALA
QVQAQTQPQPPGAPKVPPPGQASTLVTTTTTTTTVAKTTTITRPTSSSFKKDVPPSINTT
NIDTLLVATDQSERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLTETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVFR
PQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKNLE
EQLSAPKKEAKPPEELLPVSSTAPPSTPAATTTTCTTTGPPTPQFSYHDINVYALAGLSP
HININANIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIRKDFALDS
EESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNNFAAGLRAPTPQQREMMEEAA
ARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAER
MPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVAQI
YDKCMADLEQHLHAIPPALAMNPLTPALRSLLEAVVLARNSRDGIAALGLLQKAVEGLLD
ATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRXRRLSGLNATSKGKYNVEA
VELLIRNHLVNMQQYDLHLAQSMENGMHYMAVAFAMQLVKLLLVDERSVSHVTEADLFHT
IETLMRICAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPG
LREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCV
EISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVL
GIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILR
PTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKP
MQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFT
PNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPG
NRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFL
NAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFI
ELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7170 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaattacaaagccagccagcaggaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatctcttacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaggattttcaccagacacagtttctgatccaggagtgtgtgtcg
ctgatatcaaagccaaactttatctcaactttgtgttacgccattgacaatcccctacac
taccagaagagtttgaagccatcagcccatttatttactcaactgagtaaagttctcaag
ctcagcaaggttcaagaggttatttttgggcttgctttgcttaactccagcaacgtagat
cttcgtggttttgctgcacagttcatcaagcagaaacttcccgacctcctgcgatcgtac
gttgacgctgacctaggaggaaaccaggaaggtggcttccaagatattgctatagaggtc
ctgcacctactgctctcccatctgctgttcggccagaagggagccagtggagtagggcaa
gagcaaattgacgccttcctcaaaactctttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgttgtaccctgaaaaacgggacattctcatggacagaatcttg
ccagactcgggggagttagccaagaccatgatggaaaattcgcttgcagaatttatgcaa
gaagtgggctatggcttctgtgccagtgtggatgaatgcagaaacataatcctccagtat
ccgggcagagaggtgacagcaagccaggtggcgagagttttagggatgatggcccgcacc
cattctggacttgctgatggaattcccttacagtcaatctctgccccaggaggcggtatc
tggagtgatgggaaggacaagaatgatggctctcaggcacatacgtggaatgtggaggtt
ctcattgacgttgtcaaagaagtgaatcctaacctaaacttcaaagaggtgacatacgaa
ctggatcacccaggttttgtgattcgtgatagtaaaggcctccatattgtggtgtatggc
attcagaggggattgggtcttgaggtcttccctgttgatctcatctatcggccatggaaa
catgccgagggacagctgtccttcatacaacactccctgatgagcccagaagtgttctgc
tttgcggattacccctgccacacagttgccatcgacattcttaaggcaccacctgaagat
gacaacagggaaatagccacctggaaaagtttggaccttgtagaaagtcttcttagactt
tctgaagtgggtcactatgagcaggtgaagcagctgtttaccttcccaatcaagcactgc
ccagacatgctggtgctggcactgctgcagatttctacgtcttggcatcaacttcggcat
gagctcatttcaacactgatgcccatctttttgggaaatcaccccaactctgccataatc
ctgcactatgcctggcacggacaaggacagtctccttctatccgtcagcttatcatgcat
tcgatggctgagtggtacatgagaggagagcagtatgatcaggcaaagctgtcccgtatc
ctggatgtggctcaagacttgaagtctctatcaatgctgctgaatggtaccccgtttgcc
tttgttattgaccttgctgcacttgcctctcgccgcgaatacctcaaacttgataaatgg
ctgacggacaagatcagagagcatggggaaccttttatccaggcatgtgtaacattcctt
aaaaggcgttgcccttccataatgggtggtctggccccggataaggatcaaccaaaaagc
gcccagttaccccctgaaactttggctactatgttggcatgtctgcagtcctgtgctggg
agtgtgtcccaagaactgtctgagatgatattgaccatgattgctaactgcagcagtgtc
atgaataaacccagacagccgcctcctggagtaatgcctaaagttaagcaccctagcacc
ggcagtctagatgccatctctccagttcagatggatcctttgtctggaatgggatccctc
agcttgggaggcactgccacatctcacactccaagcatgcaaggtttccccacctcatta
agttcagcctttagtaatccccagtctccagcaaaggccttcccaccgctgtccaatacc
aacccaagtaccccattcggtggtattggcagtctgtcagcacagcttcctggcatggat
tctggtcctctgggctccggcattggctctggcataggctctagtttggggatgccagct
gttagcacagatcccttcagcaccagaaagatgagcacaccaggcctgaatccaccgacg
tttcagcagagtaagatcaaggcctcggacctttctcaggtgtggcccgaggcaaaccag
cactttagtaaggaaatagacgatgaagccaacagctacttccagcgcatctacaaccac
ccacctcatcctacaatgtctgttgatgatgttttggagatgttgcagagattcaaagat
tcaaccatcaaacgagaacgagaagtgttcaattgcatgctccgtaatctgtttgaggaa
tatcgcttcttcccacagtaccctgacaaggaattgcacattactgcttgcctttttggt
ggcattattgagaaggggctggtcacatacatggccctgggcttggcactgcgctatgtt
cttgaagccttaaggaaaccatttggatcaaaaatgtattattttggaattgcagcttta
gatcggtttaaaaacagattaaaggactatcctcaatattgtcaacatctggcttcaatt
gcccacttcttgcagtttccccaccatttacaagagtatattgagtatggtcaacagtca
cgggaccctccagtgaagatgcagggctccattacgactcctggcagtctggcccttgcc
caggtgcaagcgcagacccagccccaaccacctggtgcccccaaagttcctccacctggc
caagctagcacactggtcactactaccaccaccaccaccacagtagcaaagaccaccacc
atcacaaggcccacctctagcagtttcaaaaaagatgttcctccctctattaacactacc
aacattgacaccctccttgtggcaactgaccaaagtgaaaggattgtagagcctccagag
aatgtacaggaaaagattgcatttatcttcaacaacctttcgcagtccaacatgacccaa
aaggttgaggagttaaaagagactgtaaaggaagagtttatgccctgggtttctcagtat
ctggtgatgaagcgggtcagtattgagcccaatttccatagtctttattccaactttctt
gacacactgaagaacccagagtttgtgaagatggttcttactgaaacctaccgaaatata
aaggttctattgacttctgataaggcagcagccaatttctcagaccgctctctgctgaag
aacttgggtcactggcttggcatgattactttggccaaaaacaagcctatactctatact
gatctggaactaaaatctcttctactggaagcctatgtcaaaggccaacaagagctgctt
tatgtggtcccatttgtggctaaagttttagaatccagtctaagaagcatggtttttagg
ccccaaaatccctggaccatggccatcatgaatgtgctcgctgagctgcaccaggaacat
gatcttaagctaaacctaaaatttgaaattgaagttctttgtaagaatctgtcattggac
atcaatgatctaaagccaggaaacttgctgaaggataaagagaaactgaagaatttggag
gaacaactttctgctccaaagaaagaagcaaaacctccagaggagctactcccagtatca
tctacagcaccgccctcaaccccagctgccaccactacaacttgcaccaccacagggcct
ccaacccctcagttcagttaccatgacattaatgtgtatgctttggcgggcttgtctcca
cacataaacataaatgccaatattcccctcttacaagcccaccctcagctcaagcagtgt
gttcgtcagtcagttgaacgggctgttcaggagttggttcatcctgtggttgatcggtcc
atcaaaattgccatgacgacttgtgagcagataatcaggaaggattttgccctggattct
gaggagtcccgcatgcgtgtggccgctcaccacatgatgagaaacctgactgcaggcatg
gccatgattacttgccgtgagcctttgctcatgagcatcgcaaccaacctgaagaacaac
tttgctgctggacttagggcaccaacacctcaacagagagaaatgatggaagaagccgca
gcacggattgctcaggataactgtgaactggcatgttgctttattcagaaaactgctgtg
gagaaagctggccccgaaatggacaagagactagccacggagtttgagttaaggaaacat
gcacgtcaagaagggcgacgttactgtgatcctgttgttctaacctaccaggctgaacgc
atgccggaacagattagactcaaggttggtggagtggatcccaaacaactggctgtctat
gaagagtttgccaggaatgttccaggtttcttacccagtaatgatctctctcagcccact
ggcttcttggctcagccaatgaagcaacaggcctgggctacagatgatgtggctcaaatt
tatgataaatgcatggcagatttggagcagcatcttcatgccatccctccagcactagca
atgaatccattaactccggcactccgcagtttgctggaggctgtagtattggcaagaaac
tccagagatggcattgctgcactaggcctccttcagaaggccgtggagggactgttagat
gctaccagtggtgcagatgctgatcttttgctgcgctacagagagtgccatctgctggtg
ctcaaagcactgcaggacggacgtgcttatgggccgcagtggtgcaacaaacagatcacc
aggtaaagaagactctctggtttaaatgctacatctaaaggaaagtacaatgtggaagcg
gttgaacttctgataagaaaccatctcgtgaatatgcagcagtatgacctgcatctggcc
cagtcaatggagaatggaatgcactacatggcagttgcttttgcaatgcagttggtgaag
ctgctgctggtggatgaacgtagtgtgagccatgtcacagaggcagacctcttccacacc
atcgagactttaatgaggatttgtgcacactcacgggccaatgcacctgagggacttcca
cagctgatggatgtcgttcgatccaactatgaggcaatgattgatcgagcccatggtgga
ccaaacttcatgatgcactctggcatttcccaggcttccgaatacgatgatccccccggc
ctgagggaaaaggcggagtaccttttgagagagtgggtcaatttgtaccactcagctgct
gctggccgggacagtaccaaagccttttctgcgtttgttggccagatgcaccagcagggt
atcctgaagactgatgacttgatcacaaggttcttccgactgtgtacagaaatgtgtgtt
gagataagctaccgggcacaggctgaacagcagcacaacccagcagccagtgcagcaatc
atcagagcgaagtgctaccataacctggatgcctttgtgcggctcatagcccttctggtc
aaacactctggagaggcaacaaacactgtaacaaaaatcaacctcctcaacaaggtgctt
ggaattgtagttggagtgttgatccaggaccacgatgtgcgtcagactgaattccagcag
ctgccataccaccgtattttcatcatgctgctgttggagctcaatgctccagaacatgtg
ttggagaccatcaactttcaaacactgactgccttctgcaatactttccacatcttgagg
cccaccaaagctccagggtttgtgtatgcctggctggaactcatctcccatcgcatcttc
attgcacggatgctagcacatacaccccagcagaagggttggcctatgtatgcacagctg
ctgattgatctcttcaagtacttggccccattcctgagaaatgttgagctcaacaaacct
atgcaaatcctgtacaagggcaccctgcgagtccttctggtcctgctgcatgacttccca
gagtttctgtgcgactaccattatggcttctgtgatgtcatcccaccaaactgcattcaa
cttcgcaacctcatactcagtgcctttccacgcaacatgaggctccctgaccctttcaca
cccaatctcaaggtggacatgctgagtgagatcaacattgctcctcgaatccttaccaac
ttcacaggtgtcatgccctcccaattcaagaaggatttggattcgtatttgaaaacgcgc
tcaccagtcactttcttgtctgagttgcgcagcaacctgcaggtgtccaatgagccagga
aaccgctacaacatccagctgatcaacgcactggtgttgtatgtgggcacacaagcgatt
gctcacatccacaacaagggcagcactccctctatgagcaccatcactcactcggcacac
atggacatctttcagaacctggctgtggacctggacacagagggccgctacttgttcctg
aatgcaattgcaaaccagctgcgctaccccaacagccacactcactatttcagctgcacc
atgctttacctctttgctgaagccaacaccgaagcaattcaggagcaaattaccagggtc
ctgctggagaggctgattgtgaacagaccccatccgtggggcctcctcattaccttcatt
gaactgatcaagaaccctgccttcaagttctggagccatgactttgtacactgtgcccct
gagattgaaaagctgttccagtctgtggcccagtgctgcatgggacagaagcaggctcag
caggtgatggagggtactggtgccagctag
DBGET
integrated database retrieval system
