Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110169811
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Entry
110169811 CDS
T05002
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110169811 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110169811 (xab2)
03041 Spliceosome [BR:
bpec03041
]
110169811 (xab2)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110169811 (xab2)
Spliceosome [BR:
bpec03041
]
Complex B
Other components
Prp19-related factors
110169811 (xab2)
Complex C
110169811 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
110169811
NCBI-ProteinID:
XP_020791044
LinkDB
All DBs
Position
Unknown
AA seq
864 aa
AA seq
DB search
MFWGKSFVTFQSMPSFNGKADVTFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKTTL
NMIYERALKELPGSYKLWYNYLKERRKQVKGKCVTEPIYEEVNNCHERALVFMHKMPRIW
LDYCQFLVSQCKITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYL
KLSPENAEEYIDYLRSVGRLDEAALRLADIVNDESFVSKEGKSNYQLWHELCDLISQNPD
KVTSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFT
QVFDSYAQFEESMIAAKMETTVEMGQDEEDDIDLELRLARFEQLIARRPLLLNSVLLRQN
PHNVHEWHKRVKLCEGNPRQIINTYTEAVQTVDPIKATGKPHSLWVSFAKFYEENEQLDD
ARTIFEKATKVNYKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDAS
EPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNY
FEESFKAYERGIALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAK
TIYLLYAKLEEEYGLARHAMAVYERATEAVEIEERHHMFNIYIKRAAEIYGVTYTRAIYQ
KAIEVLPDEHARDMCLRFADMESKLGEIDRARAIFSYCSQICDPRVTANFWQMWKEFEIR
HGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATTSSTGTALSVVSDLAPGQMGIDDM
KMLEQKAQQLAAEAERDKPKPKEKILFVRSDTSRSELAELSKQVNPDEIDIDDEDDDDDN
QGPDEVQLEQKSVPTAVFGGLKDD
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgttctggggaaaatcatttgtaacgtttcaaagcatgccttcgttcaacggaaaagct
gacgtgacgtttgaagatgacgatctaccatacgaagaggaaataatcaggaacccctac
tctgtaaagtgctggatgcgttacatcgagttcaaacaaaatggacccaaaacaactctg
aacatgatttatgaacgtgctttgaaagagctcccgggcagttacaagctgtggtacaat
tatctaaaggagagacgtaaacaggtcaagggaaaatgtgtaacagagccaatttatgaa
gaagtcaacaactgccacgaaagagcacttgttttcatgcacaagatgcctagaatttgg
cttgactactgccagttccttgtttcccaatgtaaaatcacaagaagtcggaggacattt
gatcgtgccctaagagctctgccagttactcaacacccacgaatctggcctttgtatctg
cgatttgttcgtaatctacccctcccagaaacagctattcgagtgtaccggagataccta
aagctatctccagagaacgcagaggaatacatagattatttgcgctctgttgggcgcttg
gatgaagctgctttgcgacttgctgacattgttaatgatgaaagctttgtatccaaggag
ggcaagtcaaactatcaactgtggcatgaactgtgtgaccttatctcccagaatcctgat
aaagttacatctctgaatgttggagcaattatccgagggggacttacccgattcactgac
caactaggaaaactttggtgctccttggcagattattatataaggagtgggcactttgaa
aaggctcgtgatgtgtatgaggaggccattcttactgtggtaacagttagagatttcaca
caagtatttgatagttatgcacagtttgaagagagcatgattgcagccaagatggaaacc
actgttgaaatgggccaagatgaagaggatgatattgatttagagcttagattagctcgt
tttgaacaacttattgctcgtcgtcctcttcttctgaacagtgttctacttcgtcaaaat
ccacacaatgttcatgagtggcacaaacgagtgaagctttgtgagggcaatccacggcag
attattaacacctacactgaggctgtacagacagttgacccaataaaagccactggaaag
cctcattcactttgggtttcctttgcaaagttctatgaagaaaacgagcagttggatgat
gccagaacgatctttgaaaaagctactaaagtgaactacaaacaagtggatgacctggca
gcagtctggtgtgaatatggagaaatggaactgcgtcatgaaaactatgagcaggccctg
cgcatactgaggaaagcaacagcaattccatccaagaaagcagaatactttgatgcctct
gagcctgtccagaacagagtctataagtccttgaaagtgtggtctatgctggctgatctt
gaagagagtctgggaacatttcagtccacaaaagctgtatatgaccgcattattgacctt
cgcattgcaacaccacagatcataatcaattatgccatgtttcttgaagagcacaactac
tttgaagaaagctttaaagcatacgagcgtggtattgccttgtttaagtggccaaatgtt
tatgacatttggaacacctaccttaccaagtttattgaccgatatggtgggaagaaactg
gagagggcaagagatttatttgaacaggcccttgatggctgcccagcaaagtttgcaaaa
accatttacctactttacgccaaattggaggaggagtacggattagctcgccatgccatg
gctgtttatgaaagagctacagaggcagtagaaattgaggagaggcaccacatgttcaat
atttacattaagagagcagctgaaatttatggagtcacctatacaagagcaatctatcag
aaagctattgaggtcttacctgatgaacatgcaagagacatgtgtcttcgttttgctgat
atggagagtaaactgggtgaaattgatcgagccagggcaatcttttcctattgctcacag
atttgtgatcccagggtgacagctaatttctggcaaatgtggaaggagtttgaaattcgt
catggaaatgaggatacaattagagaaatgttaagaatcaaacgcagtgtccaggccacc
tacaatactcaggtcaatttcatgtcctctcaaatgctgaaagccactacaagctctaca
ggcacagctttgtctgtagtgtctgatcttgctcctggccaaatgggtattgacgacatg
aaaatgctggaacaaaaggcacaacagctagcagcagaggctgagcgggataaacctaaa
cctaaagaaaagatcctctttgtcaggagtgatacttcacgtagcgagctagcagaactt
tccaaacaagtcaatccagatgaaattgacatagatgatgaagacgatgatgacgataat
caaggtccagatgaagtgcaacttgaacagaagagtgtcccaacagctgtctttggtggg
cttaaagatgattaa
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