Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110170407
Help
Entry
110170407 CDS
T05002
Symbol
xrn1
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03008
Ribosome biogenesis in eukaryotes
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110170407 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
110170407 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110170407 (xrn1)
03009 Ribosome biogenesis [BR:
bpec03009
]
110170407 (xrn1)
03016 Transfer RNA biogenesis [BR:
bpec03016
]
110170407 (xrn1)
03036 Chromosome and associated proteins [BR:
bpec03036
]
110170407 (xrn1)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110170407 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
110170407 (xrn1)
Ribosome biogenesis [BR:
bpec03009
]
Eukaryotic type
Pre-60S particles
RNases
110170407 (xrn1)
Transfer RNA biogenesis [BR:
bpec03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110170407 (xrn1)
Chromosome and associated proteins [BR:
bpec03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110170407 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
110170407
NCBI-ProteinID:
XP_020791713
LinkDB
All DBs
Position
Unknown
AA seq
1673 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTDFMVRLQEQLKYFVHSKISTDKLWQKVKVYLSGHETPGEGEHK
IMEFIRSENAKPSHDPNTRHCLYGLDADLIILGLTSHEHNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSGLKEHLGSKYDLERIIDDWILMGFLVGNDFIPHLPN
LHINHDALPMLYKTYISVLPSVGGYLNENGHLNLRNFEKYVEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEEASGNQRKSFASCVINNSLFSXIRALVDMTSQQRPIGGG
KNAQADDEEEEDDLFETEFRQYKRTYYMTKMGVDVVSDEFLADQAKGYVEGLQWILHYYY
HGVQSWSWYYPYHYAPFLSDIKNISELKLTFDLGKPFMPFQQLLAVLPAASKELLPECYR
FLMTSEFSPIFEYYPLDFKTDLNGKQQEWEAVVLIPFIDERRLLAAMEPCNEKLTKAEKA
RNRHTECAVYMYDKESEFTYASSLPQMFPDIIHCRVRQQTIAMDAWHVPLDHVSRRVDRS
ALYFCGFPTLQHIPHKFYKKKSGVVVFQQSSRGENMMLEILSNKDGEAICDNVAADVLGK
AIFVNWPHLEEARVVAVSDGETKFSLEESPGIQKVYNRPSTPPPTKVSRLSDKEQKDWVK
DVQGITEHYLKRKGIVTNEIDVVVYGQLLTGRKFVPKANGLVELEKQWAKQILPFPYQAV
VKEIRAFYSSLTNFTSLDDLFPPSTAVFMVGNPYYGAMGEVQDSSDVIKDGRVRVVFSLP
HEPQLDTLIQNQHKYCVKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPCGEQRAN
IGLNLKFNKKNEEVPGYTKKTEKEWLYSAAVEELLAEYLDRFSEVFTAVSRNSHDDVFYE
DDIWPGEDQNGAEKVAEITAWLKSHPVSSMSRASCDLQVLDSAIVEKIEEAVEKTKVKKS
TRKVRVTVKPHLLFRPLEQQQGVVPDPEAEYRLFDRVVNVREGFSVPLGLRGTVIGIKGA
EKEADVLYEVLFDEEFTGGLTLRCTSPRGYRLPPCALINLSHGARVDHTSGKLTAIVKPQ
PSSTPNNSNRQLGGLNHSPRSPFIPTQHNNKHGMRGSPQGKRDSPKLLQKQTKSKDEYSN
VWQSLRNSGPPNKPPAHWQNDARAGGIRLLKKNEDATSILPTQNTNKTSTDFESLLANLK
ISTPKEPTAPSTAPAQPSTSQSDEPLSPQSFAMKGTMVLKEMLKIDSASDSAQSDGQQQN
RRRSSKKLAAKINAPHVDSPPTTSAPMANQHPMLNSKVSELACVCVGLGMAPPEFSFIGN
RQGVVCQVKLSNGLMVHGPQCQSENDAKENAAFFALQRLNSVGSGLPLPPPALYPGIPQI
RPPPLGPMNPMFNKPGLLLPPQGYGPAHLWGMAMPPHHPQNPQFYGATGTYPGAVRPPPP
ATAPIGSHNQFIPLQVTKKRVSANKKNQDREFYSAAQTVARNQTQKSPNPPVDQPQGQRN
VPAENSQSSASIAAPQTPPRQNPPPSGHTPGSASKRKHRKLAVNFEAAKVAES
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccctaaattttaccgatggatttcggagcgctacccgtgtctgagtgaagtt
gtgaaagaacatcagattcctgaattcgacaatttgtatttggacatgaatggcatcatt
caccagtgctcccacccaaacgacgaggatgtccacttccgaatctctgaagaaaagatt
tttgcagatatcttccattatctggaggtgctcttcaggatcatcaagccacgcaaggtg
ttcttcatggctgtggacggtgtggctccaagggcaaagatgaaccagcagagaggacgg
agattcaggtcagccaaagaggcagaagacaagattaaaaaagctttagagaaaggagaa
gtcctgcccacagaggctcgctttgactccaactgcatcactccggggactgattttatg
gttagactacaagagcagctcaaatattttgtccacagtaagatttctactgacaaactt
tggcaaaaggtcaaagtgtacctctctgggcatgagactcctggagaaggtgaacacaaa
atcatggagttcattagatctgaaaatgcaaagccaagtcatgaccccaacacccgacac
tgcttgtatggcctggacgctgacttgataattctgggtttgaccagccatgaacacaac
ttttcgctgctcagagaagaggtccgctttggaggcaagaaatctcagaaaagaattact
gctccagaggagacaacatttcatttgctccacttgtctctgatgagagaatatattgat
tatgagttttctgggttaaaggaacatttaggttctaaatatgatttggagagaataata
gacgactggattttaatggggtttcttgtgggaaatgatttcattcctcacctccccaat
cttcacatcaatcatgacgcgctgccaatgttgtacaagacatacatcagtgtgcttccc
agtgtagggggatatctgaatgaaaatggccacttgaaccttcgaaactttgagaagtat
gtggagaagctttctgagtttgacagagaacatttcagtgaggtgtttgtagacttgaag
tggtttgaaagcaaagtgggcaacaagtatctgaatgaggcagctggtctggctgctgag
gaggaggcttctggcaatcaaaggaaatcctttgcttcctgtgtaataaataactcattg
ttttcatagattcgagccctggtagacatgacctcacagcagagaccaattggaggaggg
aaaaatgctcaggcagatgatgaggaagaggaggatgatctctttgaaactgagttcaga
caatacaaacgcacctactacatgaccaagatgggcgtggatgtagtgtctgatgagttc
cttgctgaccaggcaaagggctatgttgaaggactccagtggattttacactattattac
catggtgttcagtcttggagctggtattatccctatcactatgccccttttctctctgac
ataaagaacatatctgagttgaagttgacctttgacctgggaaagcccttcatgcctttc
caacagctgttagcagttttacccgcagctagtaaagagctgctaccagagtgctacagg
ttccttatgaccagtgagttttcccctatttttgagtactaccctttggatttcaaaact
gatttgaatggaaaacaacaggagtgggaggctgttgtgctcattccctttattgacgag
agacggctgttagcagcgatggagccttgcaatgaaaagctgaccaaagcagagaaagcc
aggaaccgccatactgaatgtgctgtgtacatgtacgacaaggagagcgagttcacatac
gcctccagtctgccccagatgtttcctgatataattcactgtcgtgttaggcaacagact
attgctatggatgcttggcatgtaccattggatcatgtcagcaggcgtgttgaccgctca
gccctctacttctgtggtttcccaacgctacagcacatcccacataagttttataagaag
aagagtggagtggttgtattccagcagagcagcagaggggagaacatgatgctggaaatc
ctttcaaacaaagatggagaagcaatatgtgacaatgttgctgccgatgtattgggcaag
gccatatttgtgaactggccccatctagaggaggcacgggttgttgcagtatctgatgga
gagaccaagttctctctggaagaatctccaggtatccagaaagtgtataacagaccctcc
actccacctcccaccaaagtgtcacgcctgtctgataaagagcagaaagactgggtaaaa
gacgttcagggaatcacagaacattacctgaagagaaaaggcattgtgacaaatgagatc
gacgtggttgtgtatggccagctactgacaggaagaaagtttgtccctaaagccaatggg
cttgttgagctggagaaacagtgggccaagcagattttgccttttccctaccaggctgtt
gtcaaggaaataagggccttctactcatctttaacaaacttcaccagcctggatgatctc
tttcccccatctactgcagtcttcatggttggaaatccctactatggtgctatgggagag
gtgcaagactctagtgatgtcatcaaagatggacgggtgcgagttgtgttcagcctgcca
cacgagccacagcttgacactttaatacaaaaccagcataaatactgtgtgaagtacagt
cctggctatgttctggcctctcgtcttgggatcaccagctacctcgtatcccgcttttca
gggagcatcttcattggcagaggttcaaagaaaaatccctgtggagagcaaagagccaat
attggtctaaaccttaagttcaacaagaagaatgaggaagttccaggctacaccaaaaag
acagagaaagagtggctgtactctgctgctgtggaggaactgctggctgaatatttggac
aggttttctgaggttttcacagcggtatcaagaaactctcatgatgatgtcttctatgag
gatgacatctggcctggagaagatcagaatggagctgagaaagtggcagagatcacagcc
tggttgaagagtcacccagtaagttccatgagcagagcatcatgtgaccttcaagtactg
gactcggccattgttgagaagatcgaggaggcagtggaaaagaccaaggtcaaaaagagc
actcgcaaagttcgtgtgacagtgaaacctcatctactctttaggcccctggagcagcag
cagggcgtggtgcctgacccagaggcggagtatcggctgttcgatcgagtggtgaatgtc
agggagggtttctctgtgccactggggctcagaggaactgttattggtatcaaaggagct
gaaaaggaggcagatgttctttatgaagtgttgtttgatgaagaattcactggtggtctt
accctcagatgtacgtcacctcgggggtaccgcctgcctccctgcgccctcataaacctg
tcccatggagcacgagtagaccacacatcaggcaagctcactgccatcgtcaaacctcag
ccttcatctactcccaacaactccaacagacagctgggaggcctcaaccactccccaaga
tcccccttcatacccacacaacataacaacaaacatggcatgagaggttcacctcaaggc
aaaagggactctccaaaactgcttcaaaagcaaaccaagagtaaggatgagtacagcaat
gtgtggcagtctttgcggaactctggaccaccaaacaaaccccctgctcactggcaaaat
gatgcccgcgctggtggcatcagactgctaaagaaaaacgaagatgctacctccattttg
cccacacaaaacaccaacaagacctccactgactttgagagccttttggctaacctgaag
atttcaactccaaaagagccaactgcaccttcaactgctcctgctcaaccatctacaagc
caatcagatgaaccattatcgccgcagtcatttgcaatgaaggggaccatggtgctgaag
gagatgctgaagattgacagtgcatcagattctgcccagtctgatggacagcagcaaaac
aggagacggtcatctaagaaattagctgcaaaaatcaatgcgccacatgtggacagtcct
cccacaacctcagctcctatggcaaaccagcaccccatgctgaacagtaaggtgtctgag
ctggcctgtgtgtgtgtggggctgggcatggcacctcctgagttcagcttcatcggaaac
agacagggtgtagtgtgtcaggtgaagctgtccaatgggctgatggtgcacggacctcag
tgccagtcggaaaatgatgccaaggagaatgcagccttcttcgctcttcaaagactgaac
tcagtgggctcaggtttacctctgcctcctcctgctctctaccctgggataccgcagatc
agaccgccacctttaggtcccatgaatccaatgttcaacaaaccaggtttgctgttgcct
ccacagggctatggccccgctcatctctgggggatggccatgccgcctcatcacccacaa
aacccacagttttatggagcaaccggaacttaccctggagcggtccgccctccaccccca
gctactgctcccattggatctcacaaccagttcatcccactgcaggtgacgaaaaagaga
gtttcagccaacaagaaaaaccaggacagagagttttacagcgcagcccaaacggtcgcc
agaaaccaaactcagaaatccccaaatccacctgtagaccagccacaagggcaaagaaat
gtgccagcagagaacagccagtccagtgcatctatagcagcaccccagactccacccaga
caaaaccctccgccctctggccacacccctggctctgcctccaagaggaaacacagaaaa
ctggcggtaaacttcgaggctgcgaaagtggcagagtcgtaa
DBGET
integrated database retrieval system
