Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110170467
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Entry
110170467 CDS
T05002
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04510
Focal adhesion
bpec04512
ECM-receptor interaction
bpec04518
Integrin signaling
bpec04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110170467 (col6a1)
04518 Integrin signaling
110170467 (col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110170467 (col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110170467 (col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bpec04147
]
110170467 (col6a1)
00536 Glycosaminoglycan binding proteins [BR:
bpec00536
]
110170467 (col6a1)
Exosome [BR:
bpec04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110170467 (col6a1)
Glycosaminoglycan binding proteins [BR:
bpec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110170467 (col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
110170467 (col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
DUF7407
Motif
Other DBs
NCBI-GeneID:
110170467
NCBI-ProteinID:
XP_020791782
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
METLRSLFALLCVLLAASQAQVQRSRFAECPVDLFFVLDTSESVALRQKPPEYYINQIKD
FTKLFLDELRDIRHRCDRYLTWNSGALHYSDDIELVGELMDMSTSKNQLKTKIDGINYIG
KGTYTDCAIKRGIAELLVGGSHYHENKYIVVVTDGHPLTGYKEPCGGVQEAANEARQHGV
KVFAVAISPDQEDTRLSVIATDHAYRQNFTAADDSRSTNIGTIRTIINMITNETKDVCCS
FDCNAPGGAKGPDGDVGSKGEVGRPGMPGEKGDIGDVGSIGDPGPVGYSGMKGDRGGRGE
KGERGHKGYKGDKGLRGIDGIDGRKGEPGFPGLPGCKGSPGSDGLQGEPGPKGDPGSYGQ
KGAKGDPGQDGEPGRPGNSGKLGLPGDRGPPGAVGDKGERGDDGEPGKDGTRGENGQAGE
NGEQGSRGNRGPRGQPGEPGSRGEQGREGSTGPNGDTGEPGKQGAPGYRGDEGAPGPEGP
KGPRGIKGARGERGMMGDRGEDGPPGNGTVGCPGFQGYRGVRGDAGEPGSKGTLGPKGDD
GEPGDPGPDNNEPGRPGLKGAKGHRGPEGKAGPPGPPGPPGMDECEVLDIIMKLCSCCEC
KCAPMDLAFIVDSSESIGLANFALAKDFIITVIDRLIKDQQVKFSGNDSTVSVVQYSGSR
AQEVVQLGRSTNSLTEFKQMVKDLQWLAEATYTGEALEYALQNTIKLMRKDNKVVIVLTD
GRSDTSRDQVPLNVLCGKDIRVGGVGIKDYSGRVPNREQLEDVVCQSDTKKPGFSFVREN
FAELLEDTFLQNLTSKICQDKKCPDYKCSITFNRNHDILLMMDSSASVGQKNFETSKTFV
RRLAERFIDPERKSPVVRVGVAQYSRSTKMEQSLTTNLTELSYRVEQAAFSNDGTDLLQA
LDFAISRLPDRGDTSGSKKKVVLFSDGRSQDVTAAALLDKVRKVAGANLELFVIAVGSQV
NEANLRVLVSQGQPDNTSYAQRHLFRVADYPSLLRGVFHQTVSRRVAMS
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggagaccctaagaagtctctttgcacttctgtgtgtgctcctggctgcttcgcaggcg
caggtccaaagatccagatttgcggaatgccctgttgaccttttctttgtattggataca
tctgagagtgtcgccctccgacagaagccccctgaatattacataaaccagatcaaagac
ttcaccaagctgttcctagatgaactccgtgacattcgtcatcgctgtgaccgatacttg
acctggaattcaggagccctccactacagtgatgatatcgaactcgtgggagagttgatg
gacatgagcacgagcaagaatcaactgaagaccaaaattgacggcatcaactacattggc
aaaggcacttacaccgactgtgccatcaaaaggggcattgcagagctgcttgttgggggg
tcccactatcatgagaacaagtatattgtggtggtgactgatgggcatcctctgaccgga
tacaaagagccttgtggaggagtgcaggaggccgctaacgaagcccggcaacatggggtc
aaagtgtttgctgttgccatctcacctgatcaagaggacaccaggctgtcagtgatcgcc
acagatcacgcctacagacagaacttcacagcagcagacgactccaggtcgaccaacatc
gggacaattaggaccatcattaatatgattacaaacgagacaaaggatgtgtgctgctca
tttgattgcaatgcacctggaggggcgaaaggtccagatggtgatgttggctctaaggga
gaagtaggccgacctggaatgcctggagagaaaggagatattggagatgtgggcagcatt
ggagatcctggtccagttggttacagtggaatgaagggagaccgtggaggcagaggagag
aagggtgaaagaggacataaaggctacaagggagataaaggcctgagaggaatagatggc
attgatgggcgcaagggtgagcctggttttcctggtcttcctggttgtaaaggatctccg
gggtcagatggtctacaaggagagccgggaccgaagggagaccctggttcttatggacag
aaaggagcaaagggtgatcctggacaagacggtgagcctggacgccctggaaactctggt
aaactgggactaccgggagatcgtgggccacctggagccgttggggacaaaggagaacgc
ggtgacgatggtgaaccaggaaaggatggaacccgaggagagaatggacaagctggagag
aatggggagcaaggttctcgtggaaatagaggccctagaggacaaccgggggagccaggc
tcccgtggagagcaagggagggagggctcaactggccccaacggagacactggtgagcct
ggcaaacaaggtgctcctggctacagaggtgatgagggcgcccctggaccagagggaccc
aaagggccaagaggaatcaaaggagctcgtggagagagaggcatgatgggggaccggggc
gaagatggtccccctggaaatggcactgtgggatgtccaggtttccagggctatcgtggc
gtgcgtggggacgctggcgagcctggtagtaagggaaccctgggacccaaaggagacgat
ggagagcccggagatccaggccctgataacaatgaaccagggcgtcccggactcaaaggg
gccaaaggccacagaggacctgagggcaaagcgggaccacctgggcctcctggacctcca
ggaatggatgaatgtgaggttctggatatcatcatgaaactctgctcatgctgtgagtgt
aaatgtgcacccatggacttggccttcattgtggacagctcggagagtattggtctggca
aactttgctcttgctaaagactttatcattacagtcatcgacagactgattaaagaccaa
caagtcaagttttcaggtaacgactcaactgtgagtgtggttcagtacagtgggtccagg
gctcaggaggtggtccaactgggaaggagcaccaacagcctcaccgagttcaaacagatg
gtgaaggacctgcagtggctggctgaggccacatacacaggagaggcactggagtatgca
ctccaaaacaccatcaagttaatgaggaaggataacaaagtggtgatcgttctgactgat
gggcgctcagacacttccagagaccaagtgcctctgaatgtgctctgtggaaaagacata
agggttggaggggtagggattaaagattactccggccgtgtgcctaaccgggagcaactg
gaggatgtggtgtgccaaagtgacaccaagaagccaggcttttcatttgttcgtgaaaac
tttgccgaacttttggaagacactttcctgcagaacctcacatccaaaatatgtcaagat
aagaaatgtcctgactacaaatgttccatcacctttaatcgaaaccatgacatcctacta
atgatggacagctctgccagtgtggggcagaagaactttgagaccagtaaaactttcgtc
cgtcgtttggcagagcgcttcattgacccagaaaggaagagtcccgtagtccgtgtgggc
gtggcccagtacagtcgcagcaccaaaatggagcagtctctgacaaccaacctcacagag
ctgtcataccgagtggagcaggctgctttctcaaacgatggcactgatttactccaggcc
ttggattttgccatttctcgccttcccgaccgtggagacacctccggcagcaagaagaag
gtggtgctgttctccgacggcaggtcccaggatgtgactgccgccgcactcttagacaaa
gtccgtaaagtggcaggtgcaaacctggagctgtttgtgatagcggtgggcagccaggtg
aacgaggccaacctgcgcgtgctggtgagccaaggacagcctgacaacacctcctatgcc
cagcgccacctgttcagagtggcagactacccctctctgctccgcggtgttttccaccaa
accgtgtctcgcagagtagccatgtcctaa
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