Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110170500
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Entry
110170500 CDS
T05002
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03013
Nucleocytoplasmic transport
bpec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110170500
03015 mRNA surveillance pathway
110170500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110170500
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110170500
5.6.2.5 RNA 5'-3' helicase
110170500
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110170500
mRNA cycle factors
Common to processing body (P body) and stress granule
110170500
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
110170500
NCBI-ProteinID:
XP_020791813
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELIGADTQGSEYDFTDFTLPSQSQGPGHTQGHTQGHAQG
QLDAQLNGPDDGLHNGGVDDTVAKTTQLLQELNFEEDEEDAYYTKDLPVHACSYCGIHDP
ACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNV
FLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQ
LRARQISAQQINKLEELWKDNPGASLEDLEKPGVDEEPQQVLLRYEDAYQYQNVFGPLVK
HEADYDKKLKESQTQDNITIRWDLGLNKKRIAYFTLPKTDSGAAFCDMRLMQGDEICLRY
KGDLGVPWKGIGHVIKVPDNYGDEIAIELRSGANAPVDITHNFQVDFVWKSTSFDRMQSA
LKTFAVDETSVSGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRP
LSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCA
KSREAIESPVSFLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAEREL
LMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQL
GPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVT
AADRIKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAK
PDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANE
HQGIGFLNDPRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNL
RESLMQFSKPRKLLNTINPGGRFMSTAMYDAREALIPGSAYDRSSAPGRPSNMYFQTHDQ
IGMIGAGPGHMAMNLPIPLNLVMPPMPPPSYMGHANGPAGMKGGMKGKPGRGRGQRSRGG
GAQGNGPHSQASQDGASQPFSQGPLTQGYMNMSQPSQMSQPGLSQPELSQDSYLGDEFKS
QMDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgatcggagcggacacgcagggctccgagtacgacttcaccgacttcaccctg
ccgagccagagccagggcccgggccacacgcagggccacacgcagggccacgcgcagggc
cagctggacgcgcagttgaacggtccagatgacgggcttcacaacggaggagtggacgac
actgtggccaaaaccactcagctgctgcaggagctcaacttcgaggaggacgaggaggac
gcgtactacaccaaagacctgcccgtgcacgcctgcagttactgcggcatccacgacccg
gcctgcgtcgtttactgcaacaccagcaagaaatggttctgtaacggccgaggaaacacg
tccgggagccacatcgtgaaccacctggtgcgtgcgaagtgtaaagaggtgactctgcac
aaagacgggcccctgggcgagacggtgctcgagtgctacaactgcggctgtagaaacgtc
ttcctgctcggcttcatccccgccaaggccgactctgtggtggtgctcctctgcagacag
ccctgcgccagtcagagctccctgaaggacatcaactgggacagctcccagtggcagccg
ctcatccaggaccgctgcttcctgtcgtggctcgtcaagatcccgtcggagcaggagcag
ctcagggcccggcagatctcggcgcagcagatcaacaagctggaggaactgtggaaggat
aaccccggggcgtcgctggaggacctggagaagcccggagtggacgaagagcctcagcag
gttctgctcagatacgaagacgcgtatcagtatcagaacgtgttcggacctctggtcaaa
cacgaggccgactacgacaagaagctcaaagagtctcagacccaagacaacatcaccatc
cgctgggacctgggtctgaacaaaaagcgcatagcgtactttaccctgcccaagacggac
tcaggtgctgccttctgtgacatgaggctgatgcagggagacgagatctgcctgaggtac
aaaggagacctgggcgtcccgtggaagggcatcgggcacgtcatcaaagtccccgacaat
tatggagatgaaatcgccatcgagcttcgcagcggagccaacgctcccgtcgacatcacc
cacaacttccaggtggactttgtctggaagtccacgtctttcgacaggatgcagagcgcc
ctgaagacgttcgccgtggacgagacgtccgtgtccgggtacatttaccacaaactcctg
gggcacgaggtggaggacgtcaccatcaagtgtcagctccccaaacgcttcaccgcccag
ggcctgcccgatctcaaccactcacaggtgtacgctgtgaagacggtgctgcagaggcct
ctgagtctgatccagggacctccaggaaccggcaaaactgtcacgtctgccaccatcgtg
taccacctgtcgcgccagggcaacgggccggtgctggtgtgtgctcccagtaacatcgcc
gtggatcagctcacagaaaagatcgacaaaactggactgaaggtggtgcgtctgtgcgcc
aagagcagagaggccatcgagtccccggtgtctttcctcgccctgcacaaccagatcagc
aacatggacagcatgcccgagctgcagaagctccagcagctgaaggacgagaccggagag
ctgtcctccgctgacgagaagagatacagagctctgaagaggaccgcggagagggagctg
ctcatgaatgcagacgtgatctgctgcacctgcgtcggagccggagatcctcgtttggcc
aagatgcagtttcgctcgattctgatcgacgagagcactcaggccacagagcccgagtgc
atggtccccgtggtgctcggggccaaacagctgatcctggtgggcgatcactgccagctg
ggtcctgtggtgatgtgtaagaaggcggccaaagcgggtctgtcccagtctctgttcgag
cgtctggtggtcctgggcatcagacccatccggctccaggtgcagtaccgcatgcacccc
gccctcagcgccttcccctccaacatcttctacgagggctccctgcagaacggcgtcacg
gcagccgatcgcataaagaaaggctttgacttccagtggccgcagccggacaaacccatg
ttcttctacgtgactcagggacaggaggagatcgccagctccgggacctcctacctcaac
aggactgaagcggccaacgtggagaagatcaccactcgtctgctgaaagctggagccaaa
ccggatcagatcggcatcatcaccccgtacgagggacagcgctcctacctggtccagtac
atgcagttcagcggctccctgcacaccaaactctaccagcaggtggagatagcgagcgtg
gacgcgttccagggccgagagaaggacttcatcatcctgtcgtgcgtccgagccaacgag
caccagggcatcggcttcctcaacgatccgcgccgcctcaacgtcgccctcaccagagcc
aagtacggcgtgatcatcgtggggaaccccaaggccctgtcgaagcagccgctgtggaac
aacctcctgaactactacaaagagcagaaggtcctggtggaggggcccctgaacaacctg
agggagagtctcatgcagttcagcaaaccccgaaaactgctcaacaccatcaaccccgga
gggcgcttcatgagcacagccatgtacgacgccagagaggctctgatccccggctccgcc
tacgaccgctccagcgcaccgggacgtccctctaacatgtacttccagacccatgatcag
atcgggatgatcggggcaggaccggggcacatggccatgaacctgcccatccccctgaac
ctggtgatgcccccgatgcccccgcccagttacatgggccacgccaacggccccgcaggg
atgaaaggcgggatgaagggaaagccgggccgcggtcggggtcagaggtcacgtggaggc
ggggctcaggggaacggcccccacagccaggccagtcaggacggggcctcccagcccttc
tcccaggggcccctcactcagggctacatgaacatgagccaaccctctcagatgagccaa
ccggggctgtcccaacccgagctctcgcaggacagttacctcggagacgagttcaagtcc
cagatggacgtggccctgtcccaggactccacctaccagggcgagagagcctatcagcac
ggggtgaccggactgtcccagtactag
DBGET
integrated database retrieval system
