Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110170504
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Entry
110170504 CDS
T05002
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
bpec03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110170504 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
110170504 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110170504 (lsm4)
03041 Spliceosome [BR:
bpec03041
]
110170504 (lsm4)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110170504 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
110170504 (lsm4)
Spliceosome [BR:
bpec03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110170504 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
110170504
NCBI-ProteinID:
XP_020791818
LinkDB
All DBs
Position
Unknown
AA seq
145 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGAQQNKQQGKGRGGPGRGVFGGRGRGMSG
PGRGQQQQQQQEKKLGKPQGMKNRD
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttatcacttttgaagacggcccagaatcatcccatgctggtggagctgaaa
aatggagaaacgtacaacgggcacttggtgagctgcgacaactggatgaacatcaacctg
agagaagtgatctgcacgtccagggacggagataagttctggaggatgccggagtgttac
atccgcggcagcaccatcaagtacctgcgtatcccggacgagatcatcgacatggtgaag
gaggaggtggtgtccaagggccgaggacgaggaggagcgcagcagaacaaacagcagggc
aaaggcagaggaggcccgggcagaggcgtgttcgggggtcgtggtcggggcatgagtgga
ccgggccgagggcagcagcagcagcagcagcaggagaagaaactgggaaaaccacaggga
atgaagaaccgggactga
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