Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110171207
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Entry
110171207 CDS
T05002
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04510
Focal adhesion
bpec04512
ECM-receptor interaction
bpec04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110171207
04518 Integrin signaling
110171207
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110171207
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bpec00536
]
110171207
Glycosaminoglycan binding proteins [BR:
bpec00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110171207
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
110171207
NCBI-ProteinID:
XP_020792562
LinkDB
All DBs
Position
Unknown
AA seq
1491 aa
AA seq
DB search
MFSYMDSRTLLLLVASQVCLLTIVRCQEDLTEEDELSCTQDGQSYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCAKPEIPFGECCPVCAADPSTPNGVPGAKGQKGEPGDITDVV
GPRGPAGPMGPPGEQGPRGPRGDKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLG
GNFAPQMAGGFDEKSGGAQLGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQA
GPMGPRGPPGPSGKPGDDGEAGKSGKPGDRGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GAKGETGALGAKGEAGAPGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPA
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLPGPKGAPGERGPS
GASGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEPGKSGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQ
GQPGPPGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQ
GPRGLPGTPGTDGPKGAIGPAGAAGAQGPPGLQGMPGERGGAGIPGPKGDRGDVGEKGPE
GAAGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGARGAPGDRGETGPPGPAGFA
GPPGADGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVTGPKGARGAQGPSGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGPPGEK
GDAGEDGPPGPAGPSGPAGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGSAGVKGDRGNTGPAGAPGAPGAPGAP
GPVGPTGKQGDRGEAGAQGPAGPSGPAGARGMPGPQGPRGDKGEAGEGGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPSGPSGQRGPPGPVGPAGKDGSNGLPGPIGPPGPRGRSGDT
GPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTDKGPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVHPKPSNIPRKNWWSSKSKERKHIWFGETMNGGFHFSYGDDSLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSVAYMDASTGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVFEYRSQKTSRLPLVDIAPMDIGGADQEFGVNVGPVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctatatggattccaggactttactgctacttgtagcatcacaagtttgtctg
ttaaccattgtgagatgtcaagaagacctgacggaagaggatgagctgagctgtacacaa
gatggacagagctatagcgacaaggatgtgtggaaacctgagccctgccgcatttgtgtg
tgtgacacgggcactgtcctttgtgatgaaatagtctgtgaggagctcaaagactgtgcc
aaacctgaaatcccatttggagagtgttgtcctgtctgcgctgctgacccatctacaccc
aatggagtcccaggtgctaaggggcaaaaaggtgaacctggagatattactgatgttgta
ggaccaagaggaccagctggcccaatgggcccaccaggagagcaaggaccccgcggacca
agaggagacaaaggcgagaagggaagccctggccctcgtggcagagatggtgagcctggc
acacccggtaaccctggcccccctggacctcctggacctaacgggcctcccggacttggt
gggaacttcgctcctcagatggctggaggttttgatgagaagtctggtggtgcccagctg
ggagtgatgcaaggaccaatgggcccaatgggtcccagaggaccacctggccccactgga
tcacctggaccacaaggtttccaaggtaacccaggagaagctggagagcccggacaagct
ggcccgatgggtccgcgtggcccccctggaccctctggaaaacctggagatgatggtgaa
gctggaaaatctggtaaacctggtgaccgtggacctgctggacctcagggagcccgtgga
ttccctggaacccctggccttcctggcatcaaaggacacagaggttatccaggtcttgat
ggtgcaaagggagaaactggagctcttggtgcaaagggggaggctggtgctcctggtgag
agtggtgcccctggaccaatgggccctcgcggtctgcctggtgagagaggacgccccgga
cccagtggagctgctggcgcacgtggaaatgacggtttgcctggtccagctggtcctcca
ggtcccgtgggtcctgctggagctccaggtttccccggctctcctggttccaagggagaa
gctggtcctactggtgctcgtgggcctgagggtgctcaaggacctcggggagaatcaggt
actcctggatcaccgggaccttctggtgcttctggcaatcctggtactgatggtattcct
ggagctaaaggatcagctggcgctcctggtattgctggtgcccctggtttcccaggacct
cgtggacctcctgggcctcagggagccactgggcctcttggaccaaaaggaacctcggga
gatccaggtatccctggtttcaagggtgaagctggaccaaaaggagaaattggaccagcc
ggtcttcagggagcacctggcccacaaggagaagagggaaagcgtggccccagaggtgaa
cctggtgcagcagggccacttggacctccaggagagaggggtgccccaggtaaccgtggt
ttccctggtcaggatggcctgcctggtcccaagggtgctcctggtgagcgaggaccttcg
ggtgccagtggtcctaagggtgctggaggtgaccctggacgtcctggagaacctggtctg
cctggagcgagaggtctaactggacgccctggcgatgctggtcctcagggcaaagtggga
ccgtcaggagctgctggtgaagacggtcgccctggacctccgggcccacagggagcccgt
ggacagcctggagttatgggattccctggacccaaaggagcaactggtgaacctggaaag
tcaggagagaaaggactcgctggagcacctggtctaagaggtttgcctggcaaagatgga
gagacgggtgctgctggacctcctggcccagctggccctgctggagaaagaggagaacag
ggacagcctggtcctccaggtttccagggtcttcctggacctcctggcccaccgggtgag
gggggcaaacctggagaccagggtgttcctggagaagctggagctgctggtgccactgga
cccagaggagagcgaggattccccggtgaacgaggtgcagctgggccccaaggtctccag
ggacccagaggtctgcctggaactcctggaaccgacggtccaaagggagctattggacct
gctggagctgcaggagctcagggaccccctggcctgcaaggcatgcctggagagagagga
ggagctggcattccggggcccaaaggagatagaggtgatgtgggagagaaaggaccagag
ggtgctgctggtaaagatggcgctagaggtctcactggacccattggtcctcctggccct
ggtggtcccaatggtgaaaagggtgaatctggtcccgctggtccttctggagctcctggt
gcccgcggtgctcctggtgacagaggtgagactggaccccctgggcctgcaggatttgct
ggacctcctggtgctgatggtcagcctggaataaagggagaacagggagagtcgggacaa
aagggtgatgctggtgcccctggaccccaaggaccatctggtgcccctggtcctgctggt
cccactggtgttactggacctaaaggtgctcgtggtgctcaagggccttctggtgccact
ggtttccctggagccgctggacgcgttggacctcctggccccaatggtaaccctggccct
gctggtcctgctggccctcctggtaaagatggacctaagggagtgagaggagatggtggt
cctcctggtcgtcagggtgatgccgggctccgtggtccggctggtcctcctggagagaag
ggagacgcaggagaagatgggcctccaggtcctgccggtccctcaggtcctgcaggattg
gctggacagcgaggtattgtgggtctcccaggacaacgtggagagagaggattccccggt
ctgcctggaccatctggtgagcctggaaagcaaggagctccgggtggtgctggggaccgt
ggaccccctggacctgttggaccccctggactcactggacctgctggagagcctggtaga
gagggtaatccaggatcagatgggcctcctggtagagatggttcggctggagttaaaggt
gatcgtggtaacactggccctgctggtgctcctggtgctccaggcgctcccggagctccc
ggccctgttggtcccacgggcaagcagggagacagaggcgaggctggtgcacaaggacct
gctggaccttctgggcccgctggagcaagaggaatgcctggaccacaaggtcctcgtggt
gacaaaggtgaagctggagagggtggagagagaggacagaagggacacagaggattcact
ggtctgcaggggctacctggacctccaggtcaagctggagaccagggtgccactggacct
tctggaccttccggacaaagaggaccacctggacctgttggccctgctggaaaagatggt
tcaaatggactcccaggacctattggaccccctggaccacgaggacgcagtggagacacc
ggccctgctggacctcccggaaaccctggcccccctggccctcctggccccccaggccct
ggcattgatatgtccgcctttgctggtctgggtcagactgacaagggtccagatcctctc
agatatatgagagctgaccaggcctctggaaaccttcgccagcacgatgctgaagtcgat
gccacactcaagtccctcaacaaccagattgagaacatccgcagcccagaaggatccaaa
aagaaccctgcccgcacatgtagagatctcaaactctgccatccagactggaagagtggt
gagtactggattgatcccaatcagggctgcactgttgatgccatcaaagtcttctgtaac
atggagactggagagtcctgtgtgcaccctaagccttccaacattcctcgtaaaaactgg
tggtctagcaagagcaaggagcgcaaacacatctggtttggagagacaatgaatggtgga
ttccactttagctacggtgatgacagcctggcacccaacactgctgctattcagatgact
ttcttgagactgctgtctactgaggcttcacagaacctcacataccactgcaagaacagt
gtggcctacatggatgcctccacaggcaacttgaagaaggctgtgctgctgcagggctcc
aacgatgtggagatcagagctgagggcaacagtcgcttcacttacagtgtgatggaggat
ggatgcacgaaacacacaggacagtggggcaagacagtttttgaatacagatcacaaaag
acatctcgactgcctcttgtggacattgcccccatggatattggtggagcggaccaggag
tttggagttaatgttggcccagtttgcttcttgtaa
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integrated database retrieval system
