Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110171445
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Entry
110171445 CDS
T05002
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03015
mRNA surveillance pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110171445 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
110171445 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110171445 (pabpc1)
03041 Spliceosome [BR:
bpec03041
]
110171445 (pabpc1)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110171445 (pabpc1)
mRNA cycle factors
Stress granule specific factors
110171445 (pabpc1)
Spliceosome [BR:
bpec03041
]
Complex C
Other components
Complex C specific factors
110171445 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
110171445
NCBI-ProteinID:
XP_020792814
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMTDDKLKELFSKFGPALSIRVMTDENGKSKGFGFVSFER
HEDAQKAVDDMNGTELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQGVRPQHFQNMPSAMRPSAPRPQTFNTIRPTTTTNTQVPRM
MTSQRMPTQPLSQRPASASATAAPVRAIPQYKYAAGVRNPQQHIPSQPQVAMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagtgcgcccagttaccccatggcctccctctacgtgggggatctgcatcca
gacgtgaccgaggccatgctgtatgagaaattcagcccagccggcccgatcctctccatc
agagtgtgcagggacatgatcacccgccgctccctgggatatgcctacgtgaactttcag
cagcccgcggacgctgagcgagccctggacaccatgaactttgacgtcatcaaaggaagg
cctcttcgtataatgtggtctcagcgggatccatcactgaggaaaagtggagtgggcaac
atcttcatcaaaaatttggacaaatccatcgataacaaagctctttatgacacattctca
gcctttggaaacattttatcttgcaaggtggtttgtgatgaaaatggttcaaaaggctac
ggttttgttcactttgagacccacgaggctgctgagcgtgccattgagaaaatgaatggc
atgttgctcaatgaccgaaaagtgtttgttgggcgctttaaatcacgaaaggaaagggag
gctgaactaggtgcccgtgccagagaatttactaatgtttacatcaagaactttggagaa
gatatgactgatgacaagctgaaggagctctttagcaaatttggccctgcgctgagcata
cgtgttatgacagatgaaaatgggaaatccaaaggatttggctttgtcagctttgaaagg
catgaagatgctcagaaggccgtggacgacatgaacggtacagagttgaatggccgacag
gtttacgtgggacgagcacaaaagaagggagaacgccaaaatgagctgaaacgcaaattt
gaacagatgaaacaagatcgcatgaccagataccaaggtgttaacttgtatgtgaaaaat
ctggatgacggtcttgatgatgagcgtctgcgcaaagaattctctccttttggtaccatt
accagtgcaaaggtcatgatggagggtgggaggagcaaaggttttggttttgtgtgcttc
tcttccccagaggaggccaccaaagctgtcactgagatgaatggacgcattgtagccact
aagcccctgtatgtggctctggctcagagaaaggaggagcgtcaggcacatctcaccaac
cagtacatgcagaggatggccacagtccgcgctgtacccaaccctgtgctcaacccttac
caacctgctcccccctcaggctacttcatggctgctatccctcaggctcagaaccgtgct
gcatactattctgccaaccagctggctcagctgcgccccagtcctcgctgggccactcaa
ggagtgcgtcctcagcatttccagaacatgcccagtgctatgcgcccgtctgctcccaga
cctcagacgttcaacaccatccgtccaactactaccaccaacacgcaggtcccgcgcatg
atgacctcccagcgcatgcccactcagcctctgagccagcgacctgccagtgcttcagcc
actgcagctcctgtgcgtgccatccctcagtacaagtacgctgctggagtgcgcaaccca
cagcagcacatcccctcccagccacaggtcgccatgcaacagcctgctgtgcacgtccaa
ggacaggagccactgactgcctcaatgctggctgctgcccccccacaggagcagaagcag
atgctgggtgaacgtttgttccccctgattcagaacatgcaccccagtctggccggtaag
atcactggtatgctgctggaaattgacaactcagagctgcttcacatgcttgagtctcct
gagtctctgcgctcaaaggtggatgaggcagttgccgtgcttcaggcccaccaggccaaa
gaagcagctcagaagtccactactccagctggagttcccagtgtctag
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