Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110173285
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Entry
110173285 CDS
T05002
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110173285 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110173285 (skiv2l)
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110173285 (skiv2l)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110173285 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
110173285 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
MTR4-like_stalk
ResIII
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
110173285
NCBI-ProteinID:
XP_020794938
LinkDB
All DBs
Position
Unknown
AA seq
1255 aa
AA seq
DB search
MERTNVPPVGSMDLPLSLLEMGCSGHFELITHPTPGQPLPPLTTLPHGLPPTSLSLEKEV
EKQFLQDPAWLPIHDTDFCFQKFLKVTKREVNVDSLLNCAPTPLHSGLSVVRDPTTGMLL
DFTEVLLENTDLSAKNSLSLQRQPGPPSESLRGSNTSYPFLPGGMEELTLDQIKKKSDLE
EDIDFENDLLKVAPGLKTGMDFTEKDAKVAKPEVNLMSLLTTYDGISDFHRDVEEKEEVK
DTKEASTLPRTNSLEDLGIKDAVSSLTSSEKSKDEKFKEKPEEKKKWAIPVNISSPCDDF
YKRIPNPAFKWPFELDVFQKQAILRLEAHDSVFVAXXXXXXXXXXXXXXXXXXXXXXXXY
AIALSQKHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILR
SMLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFS
EWIGRIKKRHIYVISTMKRPVPLEHYLYTGNSTKTQKELFLLLDATGNFLTKGYYAAVEA
KKERTSKHAQSFGTKGTNQSTTASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDENAR
SLDSMDLTTSIEKAEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILK
EVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRA
GRRGLDATGTVIILCKAGVHEMSDLHVMMLGKPTMLQSQFRLTYTMILNLLRVEALRVTD
MMRRSFSESHRDTQASERRISELKQTLSSLPPLDTEGQLSDLLPYYHTVTELRTTTETVQ
KAVLESVNGLKALSVGRVVVVNNSQHLNALGVILQVSSDSVNRTFTALIICDKGNEEGGG
KNNSDTFPHLFNTALFIPEGPCSHTVQKLKLQDISAITVKTLKVIPDRIIDNYNKRQQPR
FRNDPPGQAISTATQELLRLAEANPGGVASLDPVNDLQLKSVEVVEGCMRLRLLQDALRD
FNCIHSPTFADQFSRVKERMSVQEELDKLLFLVSDQSLTLLPEYHQRIKVLQSLQYIDSS
GAVQLKGRVACQISSHELLLTELLFENSLSPLAPEESAALLSCLVFTQNTQVEPHLTNTL
KEGIDRVLAVAKRIGELQMDCGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDV
QEGTVVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaccaatgtgcccccggtgggctccatggacttgcctctgtccttgttggag
atgggctgctccggacactttgagctgatcacacatcccacaccggggcagcctttgcct
ccactcaccacgcttccccatggtctgcccccgacaagtctgagtttagaaaaagaagta
gaaaaacagtttttacaagatcctgcatggctgcccatccatgatacagacttctgtttt
cagaagtttctcaaagtaacaaagagagaggttaatgtggactctctccttaactgtgct
ccgactcctcttcactccggtctgtctgtggtccgagacccaaccaccgggatgctcctg
gacttcacagaggtgctacttgaaaacactgatctctctgcgaagaactctctctcatta
caacggcagcctggtcctccatccgagagccttcgagggagcaacactagttaccctttc
ctcccaggaggaatggaggagctcactctggaccaaattaaaaagaagtctgacttggag
gaggatattgactttgaaaatgatttactcaaagttgctccaggactgaaaactgggatg
gacttcactgaaaaagatgccaaagtagcaaagccagaggtcaacctcatgtccctgttg
accacatacgacggtatttctgacttccatcgagatgtcgaggagaaagaggaagtgaaa
gacactaaagaggcttcaacactaccaaggacaaacagtctcgaggaccttggcatcaag
gatgctgtctcctcattgacttcgtcagaaaagagcaaagatgaaaaatttaaagaaaaa
ccagaagagaaaaagaaatgggcgattcctgttaacatcagctctccctgtgacgacttc
tataaacgcatcccgaacccagcatttaagtggccatttgagttggatgtatttcagaaa
caggccatcctcagactggaggctcacgactctgtgtttgtggccgnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtac
gccattgctctgtcgcagaagcacatgacaagaacaatctacacctcaccaatcaaagcc
ttgtccaatcagaagttcagagactttaaaaccacattcggagatgtgggcctgctcacg
ggggacgtacagctcagccccgagtcctcctgtctcatcatgaccacagagatcctacgg
tcgatgctgtacaatggctcagaggtgatcagggacctggagtgggtcatatttgatgaa
gttcactacatcaatgatgctgagagaggtgtggtctgggaggaggtgttgatcatgctt
ccagatcatgtcagcatcattctcctcagtgccactgtcccaaatgctctggagtttagt
gagtggatcggtcgcataaagaagagacacatttatgtgataagcactatgaagagacca
gtacctctggagcattatttgtacacaggaaacagcaccaagactcagaaggaactgttt
ctgctgctggacgccacaggcaactttctcaccaaaggatattatgcagcagttgaagcc
aaaaaggagcgcaccagtaaacacgctcagtcatttggcaccaagggcacaaatcagagc
actacagccagtcaggatcggtcggtgtggctgaccctgcttcacttcctgtctcagaga
cagcagactccagttgtggccttcaccttctccaggactcgttgtgatgaaaacgctcgc
tcgctcgactccatggacctcactacctccatagagaaggctgagattcactcgtttttc
cagaaaagtttgagccgactgcgaggtggagacagacagctaccccagatcctgctgatg
agggacctgttgaagagaggcattgctgtacatcacagtgggatcttgcccattctgaag
gaggtgatcgagatgctcttctccagaggcctggtgaaggtactatttgccacagagacg
tttgcgatgggagtgaacatgccggcccggaccgtggtgtttgacagcatccggaaacat
gacgggacaggattcaggaacctgctacccggtgaatatattcaaatggctgggcgagca
ggaagaagaggactggacgcgacagggacagtcatcattctgtgcaaagctggagtccac
gaaatgtccgacctccatgtcatgatgctgggtaagccgacaatgctacagtcccagttc
agactgacctacaccatgatcctgaacctgttgcgagttgaggctctcagagtcacagac
atgatgaggaggagcttctccgagagccaccgcgacacacaggcgagtgagaggcgtatc
agtgagctgaagcagaccctgtcctccctgcctcctctggacactgagggccagctgtct
gacctcctgccgtattaccacactgtgacagagctcaggaccactacggagactgtacag
aaggccgtgttggagtccgtgaacgggctcaaagctctgtctgttggtcgagtcgtggtc
gtcaacaactcacaacatctcaacgctttaggagtcatactacaggtctccagtgactca
gtgaatcgcaccttcacggctctgatcatctgtgacaaagggaacgaggagggaggtgga
aaaaacaacagcgacacgtttcctcatctgttcaacacggcgctgttcatccctgaaggt
ccctgcagtcacacagtgcagaagctgaagctgcaggacatttctgcgatcaccgtgaaa
actctcaaagtgatccccgacagaatcattgacaactacaataaaagacagcagccacga
ttcaggaatgaccctcctggacaggccatctccacggcaacccaggagcttctgcgattg
gctgaggcaaacccagggggtgtggcttctctggaccctgtgaatgacctgcagttgaag
agtgtggaagtggtggaagggtgcatgaggctccggctgctccaagacgctctcagggac
ttcaactgtatccactcgcccactttcgctgatcagttttctcgagttaaagagaggatg
agtgtccaagaggagctggacaaactgctgttcctggtttcagatcagtccctgacgctg
ctgcctgagtatcaccaacgaatcaaggtgctgcagtctctccagtacatagacagcagt
ggggcagtccagttgaaggggcgtgtggcttgtcagattagcagtcacgagctgctcctt
accgagctcctgtttgaaaactccctgagccctctggctcctgaggagagcgccgccctg
ctgtcctgtctggtgtttacacagaacacacaggtggaaccgcatcttaccaacacgctc
aaagagggcattgaccgtgttctagcagtggccaagcgaatcggggagctccagatggat
tgtgggataccgcagactgcagaggagttcgtgggacagttcaagtttggactgacagag
gtggtgtactgctgggccaggggcatgccctttgcggagatcgcgcagctgacagacgtc
caggaggggacagtagtgcgctgtattcagagactggacgaggtgctgaaggaggtccgg
caggcggcccggatcgtgggagactctgttctgggaagtaaaatggagcgcgcttctttg
gctattcgtcgggacatagtcttcaccgcgtccctgtacacccactga
DBGET
integrated database retrieval system
