Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110174793
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Entry
110174793 CDS
T05002
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03013
Nucleocytoplasmic transport
bpec03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110174793
03015 mRNA surveillance pathway
110174793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110174793
Enzymes [BR:
bpec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110174793
5.6.2.5 RNA 5'-3' helicase
110174793
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110174793
mRNA cycle factors
Common to processing body (P body) and stress granule
110174793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110174793
NCBI-ProteinID:
XP_020796559
LinkDB
All DBs
Position
Unknown
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSQYDFTDFTLPSQTQTQGQTQSQLDCQVNG
PDGVLVNGDDPVVKATQLLAELNFEEDEEDAFYSKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEHEQLRARQITAQQ
INKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRMKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKGGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSAYDRSSNGRSSLYFQTHDQIGMIGSGANPLASLNIP
IPFNLVMPPIPPPGYLGQVNGPSTGRGGLKGKSGGGGGRGGRQRGRNMGNSGGGGDRGGH
MTSQASQDLGSQSFSQGPLTQGYMNMSQPSQMSQPGLSQAELSQDSYLGDEFKSQMDVAL
SQDSTYQGERAYQHGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtatgggcccagctcgcagacgctcaccttcctggacacggaggag
acggagctgctgggagcggacacgcagggatcccagtacgacttcacggattttacgctc
ccgagccagacccaaacacaaggccagacgcagagccagctagactgccaggtgaatggt
cctgatggggtgctggtgaatggagatgaccctgtagtgaaggccactcagctgctggca
gagctcaactttgaggaagacgaagaggatgcgttttacagcaaagacctgcctgtacac
gcctgcagttattgtggaatccatgatccggcctgcgtggtttactgtaacaccagcaag
aagtggttttgtaatggccgagggaacacatctggaagccacattgtgaaccatctggtg
agggcaaagtccaaggaggtgaccctgcacaaagatggacccctcggagagactgtgctg
gaatgctacaactgcggatgccggaacgttttcctccttggcttcatcccggccaaagcg
gattctgtcgtggtgttactctgcaggcagccatgtgcgagccagagcagcctgaaggac
ataaactgggacagctctcagtggcagccgctcatccaggaccgctgcttcctatcatgg
ctggtgaagatcccgtctgagcacgagcagctgagagccaggcaaatcacagcgcaacaa
atcaacaagctggaggagctctggaaggaaaatcccagtgcgactctggaggacctggag
aagcctggagtggatgaggagccccaacacgtgctgctgcggtatgaggacgcataccag
taccagaacatctttggaccactggtcaaactggaggcagactacgacaagaagctcaag
gagtctcagactcaagacaatatcacagtgagatgggatttgggactgaataaaaagagg
attgcttatttcacgctcccgaaaacagattcagacatgcggctgatgcagggagatgag
atatgcctgagatataagggagacctggctccaccgtggaagggcatcggacacgtcatc
aaagtgcctgacaattatggagatgagattgccattgagctccggagcagcgccggggct
ccagtcgaaatcccacacaatttccaggtggattttgtctggaagtccacatccttcgac
agaatgcagagtgccctgaagacttttgctgtggatgagacctcagtctccggttatatt
tatcacaaactcctggggcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcactgcccagggcctgcctgacctcaaccactcacaggtttatgcagtgaagaca
gtgctgcagcgccccctgagtctgatccagggacctccaggcactggcaaaactgtcact
tctgctacaatagtgtaccacctcgctcgccaaggcaatgggccagtgctagtgtgtgct
cccagtaacatcgcggtggaccagctgacagagaagatccatcaaactggactcaaagtg
gtgagactctgtgccaagagcagagaggccatagactctcctgtgtccttcctggctctg
cacaaccagacccggaacatggacagcatgcctgaactgcagaagctgcagcagttgaag
gatgagaccggggaactgtcttcctccgatgaaaaacgctacagagctctgagacgcact
gctgagcgggagctgctgatgaacgctgatgtgatctgctgcacgtgtgttggagctgga
gatcctcgtttggccaaaatgcagtttcgctccattctgatcgatgagagcacccaggcc
acagagccagagtgtatggtccccgtggtactcggcgccaagcagctgatcctggtgggc
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcggccaaagcgggtctgtcc
cagtctctgtttgagcgcctagtggttctgggcatcagacccatcaggctccaagtgcaa
tacaggatgcacccagccctcagcgctttcccctccaacatcttctacgagggctctctg
caaaatggagtcactgccgctgaccggatgaaaaaaggctttgacttccagtggccacag
cctgacaaaccgatgttcttctacgtcactcaggggcaagaagaaatcgccagctcagga
acctcctatctcaacagaactgaggcggccaacgtggaaaagatcaccactcgactgctg
aaaggaggagccaaacccgaccagatcggaatcatcacaccgtatgagggtcaaaggtca
tacctggtccagtacatgcagtttagcggatcactgcacaccaagctctaccaggaggtg
gagattgccagtgtagatgcgttccagggcagagagaaggacttcatcatcctctcctgt
gtccgggctaatgagcaccagggcatcggtttcctcaatgaccccagacgcctcaatgtg
gcgctcacccgcgcacgatacggtgtcatcatcgtggggaaccccaaagccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggtgctggtggagggg
cccctgaacaacctccgagagagcctcatgcagttcagcaaaccccgaaaactggtcaac
acaatcaatccggggggtcgcttcatgagcactgccatgtatgatgccagagaggccctc
atccctggatctgcctacgaccgcagcagcaacgggcgctccagtctttactttcagact
catgatcagatcgggatgattggctctggagcgaatcctctggcctctctgaacatcccc
attcccttcaacctggtgatgcctcccatccctcccccggggtacctgggccaggtcaac
gggccctcgacaggtcgtggaggcctcaagggaaagtcggggggaggaggaggtcgagga
ggcaggcagaggggcaggaacatgggcaacagtggaggagggggggaccgtggggggcac
atgaccagtcaggccagtcaagacctgggctctcagtccttctcccagggacccctcaca
cagggctacatgaacatgagccagccctcccagatgagccagcccggtctgtcccaggcg
gagctctcgcaggacagttaccttggagacgagttcaaatctcagatggatgtagctctg
tcccaggactccacctatcagggggagcgagcctaccaacacggggtgactggactgtcc
cagtattag
DBGET
integrated database retrieval system
