Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110175730
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Entry
110175730 CDS
T05002
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bpec03009
]
110175730 (pdcd11)
Ribosome biogenesis [BR:
bpec03009
]
Eukaryotic type
90S particles
Other 90S particles
110175730 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
Suf
OB_RRP5_4th
TPR_19
HAT_Syf1_CNRKL1_C
OB_RRP5
UTP6_C
TPR_16
TPR_CcmH_CycH
ARM_TT21_5th
ARM_TT21
TPR_15
PPR
DUF7017
DUF2110
Wzy_C_2
ANAPC3
Motif
Other DBs
NCBI-GeneID:
110175730
NCBI-ProteinID:
XP_020797599
LinkDB
All DBs
Position
Unknown
AA seq
1800 aa
AA seq
DB search
MASMEEDFPRGGTVKKPSESQIVVQRAEVDNLFQSSERTETKKRKGAGKDDGKKVKKTKT
EDALMLNAAGNIVEILHVKNVKEGMLLLGCVKEVTDFEVTVSLTGGLQGFLSIKNISDSY
TKLLTEHLNSDEEFFSLPHLFIPGMVIRCVVAKIDLTKGGSLSIQLSVNPKMVNKSLSSN
SVKTGMILSGCVESIEDHGYIIDIGVSGSKAFLPKNAVKDKNNCPEDLHVGQYVTSLVEK
VKNDGRVVQLSVSPKNIAQAFADDDQGWTLTNILPGLLVKATITKVTKHGLFLKFLSNFS
GQVDFLHVEPGKASSYKEGDEVRACVLYVDPTTRLVGLSLRNYLVLPGTRVDTAHSGGIQ
VGQVVKNCKMTALHHASGGILELPDKMQAFVHKNHMKEYSAPANENRTLAKAEHTCRILD
FCLIDQIYCASLRKSVIEKPFFRYHDIHSGQIVEGTVSLLFDYGMIVHLSDHIKGLVPRT
HLSDIVLKNPEKKYMEGMKVKCRVLSVDAENKKLSLTRKKALIESSLPLFLSFADARPGR
VSHGYIVCVKKFGCIVRFYNNVKGLVPLNELSSEAIVSPEEVFYVGQVLKTKVLQCDVVK
EKLLLSFKAAVEGNVEEPLKSDYECDVGKKVDVRVLKKLVSGLEVAILXXXXXXXXPTMH
LTDHLSNGPLLWESLQEGDTISNLVCFYKNKQNITLTKKPTIIWAIEEGILAKDFSEITV
GLQLYGWIKNIMAYGVFVEFPYGLVGLSPKSAMTDTFIADATTAFELGQTVIAKVTNIDE
EKRRFLVTLKISEVISPVGDQQTRLTSGLQERWAVTEMLSMRENADLRNQLSNLSIGQKV
KLTVDSVVDTHAIFKSDELIGATIIATKNHFIGLKLSPGQKVTAVILFVDILSATVQVSI
LSRLLSKKKSLTEGSKYQAMVQFVEKDFAVISLGDTAQLAIIQTHSHLNEVTLHDSERLK
PGMTFHVEVIDPACEALQGLPLVSWERNPVKRQRTTSETQGAKGNCFGDIVRGTVRSVKP
TCIQLTLENGVVGNVHVSEVMEQDKIGRGSFPASSIKVGSKVTARVIGGREVTSHRFLPF
SHPKFKFNCPELTLIPSKLEASDFKPVITKEKLGSYTVGEEITCFVSKYHPDKKSLEITT
DPNITGTVELLAMITDPKEAGHPEKLYKLGQAIRAKVIDVSSKPQRFVLSLTGTHKLEKD
SVCVGVVKNVQPHGLQVRLPFGGTGTVAVTDLSDAYKPNALDAYSKDQLIKCYLLECENG
KWHLSLRQSRINPGQAKAVKDTEVLSLDSLKCGQIIRGYVKAVIEQGIFIRLSRGITGRA
EIQKSTKYFISSHKILADHLPPNTLLTTKIIRIDQKEELVDLSLLPVDTGKPDVLPESLG
LPLRLVGEEKEKHDTKRKRKLPEMPQKEVLTKKKKSKKTKVDDSDSGVEVYFREEENEEK
NKPAPVNVNQAKSSAGQARLQVTGGFSWDIGLSSLKPISVTHDGDSSDGEDQETSIRPQK
KTRHELEQEKKESEKALMKRELELMDPNLRPEDDAAFERLLLASPNSSLLWLQYMAHHLQ
ATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERALQFCEPM
PVYQQLADLYAKSDKTKEAEALYKSMVKKFRQNKTVWLSYGTFLLQQGQSDAASALLQRA
LKSLPSKDSVDVIAKFAQLEFRYGDIEKGRTMFDKVLTSYPKRTDLWSVFIDLMVKHGSQ
KEVRALFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQKVKEKAMEFVESKGTEASS
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaatggaggaggacttccctcgtgggggaacagtaaaaaaaccctcagaaagc
caaattgtggttcaaagagcagaagtagacaatctctttcagtcaagtgaacgcacagaa
actaaaaaaaggaaaggggctggcaaagacgatggcaaaaaggttaagaagacgaaaact
gaagatgctttaatgctcaatgctgctggcaacattgtggagatactgcatgtcaagaat
gtgaaggagggcatgttattactgggttgtgtgaaagaggtaacagactttgaagtaaca
gtcagtttgactggtgggcttcaaggttttctcagtattaaaaacataagtgattcatac
accaagttactcacagaacacctcaactcagatgaagagtttttctctttgcctcatctc
ttcatccccggcatggttatcagatgcgttgtagccaaaatagacttaactaaaggggga
tcacttagcattcagctttctgtcaatcccaaaatggtgaacaagtcactctcctcaaat
tcagtaaaaactggcatgattttgagtggatgtgtagagagcatagaggaccacggatat
attattgacatcggcgtctctggcagtaaagctttcctacctaagaatgcagtaaaagac
aaaaacaactgtcctgaagatttacatgtgggccagtatgtgacttcactagtggagaaa
gtcaaaaatgatggccgcgttgtgcagctttctgtcagccctaagaacattgctcaggca
tttgctgacgatgaccagggctggacactcacaaacatacttcctggtcttctggtcaaa
gcaaccattacaaaggtcaccaaacatggactatttctgaagtttctctctaactttagt
ggtcaggtagactttctccacgtggagccaggaaaagcatcaagctacaaggaaggagat
gaggtgcgcgcctgtgttttgtatgtggatccaaccacacgtttggtagggttgagcctt
cgtaactaccttgttttacctgggacccgggtggacacagcccattctgggggtatacag
gttggtcaagttgtgaagaactgcaagatgacagctctacatcacgcatcaggaggcata
ttagagttgccagacaaaatgcaagcatttgtccataaaaaccacatgaaagaatatagt
gctccagcgaatgagaacagaactctggccaaggctgaacacacttgtaggatcctggat
ttctgcctaatagaccagatttattgtgcctctttacgcaagagtgtaatagagaagcca
ttttttagatatcatgacattcattccggtcaaatagtagaggggacagtgtcactgctg
tttgactatggaatgattgtccatctttcggaccatattaaaggcctggtgccacggacc
catctgtcggacattgtgctgaaaaacccagagaagaagtacatggaaggcatgaaagtt
aaatgtcgagtattatctgtagatgcagaaaacaagaaactgtctctgacaagaaaaaag
gctctgattgaaagctccttgcctctttttctgagctttgctgatgcccgcccaggacgt
gtgtctcatggctatatcgtgtgtgtcaaaaaatttggctgcattgttcgtttctacaac
aatgttaaaggacttgtgccattaaatgagctcagctctgaagccattgtcagccctgag
gaggtcttctatgttggacaggttttaaagaccaaagttcttcagtgtgatgttgtaaaa
gagaaattgttgctctcatttaaagctgcagtggagggaaatgttgaagaacctctcaaa
tctgactatgaatgtgatgttggaaagaaagtggatgttcgggtgctgaagaaacttgtc
agtggtcttgaagttgccattttgnnnnnnnnnnnnnnnnnnnnnnnncccacaatgcac
ctcactgatcacttgtccaatggccctttgctgtgggagagtctgcaggagggagacacc
atctccaaccttgtttgtttctacaagaacaaacagaatattactctaaccaagaaacca
actataatatgggctatagaagagggaattttggccaaagatttctcagagataactgtg
ggactgcagttatatggctggatcaagaacattatggcctatggcgtctttgttgagttc
ccatacggccttgttggtctttccccaaaatctgccatgaccgatacatttattgcggat
gcaaccacagcctttgagctcggccagaccgtgattgccaaagtgacaaacatagacgag
gaaaagcgacgttttttggtcacgctgaagatatctgaggtcatctcacctgtgggagac
caacagaccagactgaccagtggtctgcaggagagatgggctgtgactgaaatgttgtcc
atgagagaaaatgccgatctacgaaatcagttgtcaaacctaagcattggacaaaaagtg
aagctgactgtggattctgtggtggacacccatgctatctttaaatcagatgagctaatc
ggtgctacaataatcgccaccaagaaccattttattggtctcaagttatcacctggacaa
aaagtgactgctgttatactttttgtggatatcttatctgctactgtccaggtctccatc
ctctctaggctattatcaaagaagaaatctttaactgaaggttcaaaatatcaagcaatg
gtgcagtttgttgagaaagactttgctgtcatctctttgggggatacagcacaattggcg
atcatacaaactcacagccatttaaatgaagtcacgctccatgattcagaacggctgaaa
cctggaatgacttttcatgtggaagtgatcgatcctgcttgtgaggcactgcaagggctc
cccctagtgtcttgggagcgtaatccagtgaagcgccagcgcacaacctctgaaacacaa
ggagcaaaggggaactgttttggagatattgtgcgtggtacagtgcgttcagtgaagccc
acgtgtattcagctcactctggagaatggagttgtgggcaatgtgcatgtgtctgaagtg
atggagcaggacaagattggacgggggtctttccctgcatcctccattaaagtaggcagt
aaggtcactgccagagttataggaggaagagaggtcacaagtcatagatttctgcccttt
tcacatccaaagttcaaattcaattgccctgagcttactctgattccaagcaaacttgaa
gccagtgatttcaaaccagtcataaccaaggaaaaacttggcagctatactgttggggaa
gagatcacatgctttgtatcaaagtatcatccagataagaagtcactggaaattaccaca
gatcctaatatcactggaactgttgaacttcttgccatgatcactgacccgaaggaagct
ggtcacccagagaaactgtacaagcttggccaagctatacgagctaaggttatagatgtg
agctccaaaccacagcgatttgtattgtcactcacaggaacacataaacttgagaaggac
agtgtttgtgtgggagtggtgaaaaatgtgcagccgcatggtctacaggtcagacttcct
tttggaggcacaggaacagtggctgttactgatctctcagacgcctacaaacctaatgct
cttgatgcctacagcaaagaccagctcatcaagtgttaccttctggaatgtgaaaatggc
aaatggcatttgtctttacgtcagtcaagaataaatccaggacaggcaaaagctgtgaag
gacacagaggtcttatctttggacagcttgaaatgtggacagatcattaggggctatgtc
aaggccgttattgaacaggggattttcatccggttgtccagaggaattacaggaagagca
gaaattcaaaagtccactaagtactttatctccagccacaagattcttgcagatcatctg
cctccaaacacgcttctcacaaccaaaattattcgcatcgaccaaaaggaggagttagtc
gacctctctttgctcccagtggacaccgggaagccagatgtccttcccgaatctctgggt
ctgccactgcggcttgtgggagaggagaaggagaaacatgatacgaagagaaaacgtaaa
ctgcccgagatgccgcagaaagaggttctaactaaaaagaaaaagtccaaaaagacaaag
gtggatgacagtgacagtggtgtggaggtgtatttcagagaggaggaaaatgaagaaaag
aacaaacctgctcctgtgaatgtaaatcaggccaaatcttctgctggacaggccagatta
caagtaacagggggattttcttgggatatcggccttagctccctgaaaccaatctctgtg
actcatgatggggattccagtgatggagaagaccaagaaactagcatcagaccgcagaaa
aaaacacggcatgagctggagcaggagaagaaagaatctgagaaggccttgatgaagcga
gagctagagctcatggacccaaacctgaggcctgaagacgacgctgcatttgagcgtttg
ttgttggcttcaccaaacagctctctgctttggctgcagtacatggcccaccatctacag
gccacacagattgaacaggcccgcgctgtggccgagagggctctcaaaacaatctcattc
agggaggagcaggaaaagctgaatgtgtgggtggccctacttaatctagagaacatgtat
ggcacagaggaaagcctgaagaaagtctttgagcgagcgctgcagttctgtgagcccatg
cctgtttaccagcagctagcagacctctatgcaaaatctgacaagacaaaggaggctgag
gctctctataaaagtatggttaaaaagtttcgacagaacaaaactgtgtggctgagctat
gggacttttttgcttcaacaaggacagagtgatgctgccagtgctctcctacagagggca
ctcaaaagtctgccttccaaagacagtgtggatgtgattgctaagtttgctcagctggag
tttcgttacggtgacatagaaaaaggtcgcaccatgtttgacaaagtgctgaccagttac
ccgaaacgcactgacctctggtctgtgttcatcgatcttatggtcaaacatggatcccag
aaggaagtcagggcactgtttgaccgtgtaatccacctgagtgtttctgtgaagaaaatt
aagttcttcttcaagcgctatttagaatatgagaagaaacatggcacccctcagagcatc
cagaaagtcaaagaaaaagccatggagtttgtggaatccaaagggacagaagcatccagc
tga
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