Bacteroides pectinophilus: NQ488_00905
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Entry
NQ488_00905 CDS
T09080
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpen
Bacteroides pectinophilus
Pathway
bpen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NQ488_00905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpen03400
]
NQ488_00905 (mfd)
Enzymes [BR:
bpen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NQ488_00905 (mfd)
DNA repair and recombination proteins [BR:
bpen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NQ488_00905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
IstB_IS21
Ribosomal_L20
Thioredoxin_13
Motif
Other DBs
NCBI-ProteinID:
UWN95902
LinkDB
All DBs
Position
217292..220834
Genome browser
AA seq
1180 aa
AA seq
DB search
MSSMQSKNKSKVFNEPIHELAGYESITKGLSVQGSAMMLSGCIDSGKAHMIQALGADAFC
RVIITYDEAKAREIVDDSRFFNRNTVFYPAKDLIFYSADIRSNELTSQRMKAIRAIIENE
GDLTVVTTIDGCADMLMTREKLESGILTFEEGGIVDLAQLKKQLVLLGYENMGQVQAPGE
FGVRGGIIDIFPLTDETPVRIELWDDEIDSIRSFDVESQRSIERLQKVTIYPATEYVLTQ
VEIDDGVAAINDEVAKQADIFKKADKYEELSRLKAIPDNFNETTDIDKFVHSFVKDTVSL
IEYFDRETTLFVLDEPNRIAERMELVEFEFTDSTKNRLEKGYIIPSQADMIFTCREIYAK
VNCRRLLVVSTLEYKPNGLDIAEHFKVDSKSISSYNNRFEYLVADLKKYKKSGYRIVLIS
NSRTRAMRMVDDLRDNGIDSYFSEDYDKALVEGEIMVTYGNIHKGFEYPIVKFVVIAESD
IFGQEKKDKKRRKKQYNGKAIADFNELAIGDYVVHENYGLGIYRGIEKIEVEGIERDYIK
IEYSGTDTLYILATQLDVLQKYAGADARKPKLNKLNSQEWGKTKSKVKTAVEQVAKDLVE
LYAKRQNEQGFQFGEDTVWQREFEEMFPYEETSDQLAAIEDTKHDMQSTKIMDRLICGDV
GYGKTEVAIRAAFKAVQDGKQVAYLVPTTILAQQHFNTFEQRMKDFPVKVAMLSRFRTPK
EIKQTIADLRKGMVDIVIGTHRLLSKDVEYKDLGLLIIDEEQRFGVSHKEKIKKLKENVD
VLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRMPIQTFVTEQNDEMVREAINRELARGG
QVYYVYNRVRNIDEAASRIQQLVPDANVAYAHGQMDEKTLEAIMYDFINGDIDVLVSTTI
IETGLDISNVNTMIIEDAENLGLSQLYQLRGRVGRSNRTAYAFLLYRRGKMLKEVAEKRL
HAIREFTELGSGFKIAMKDLEIRGAGNVLGEAQHGHMAAVGYDLYCKMLNEAVNELKGIS
NGADFETVVDLNVDAFIPSTYIRSEAQKLEIYKRIAAIETSDEQMDMQDELTDRFGDLPH
SANNLLTIALIKSVAHKADVRKIKGGVVNKEDWRVEIFFKQDAAIDVAQIPDFLERHEPF
LTFRPGNDPYFVYEARHKDFPTDSAFLAALETLLEGIPKC
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagttcaatgcaaagtaagaataaaagtaaagtatttaatgagccgatacatgaactg
gcgggatatgagagcataacaaaggggctgtcggtacagggcagcgccatgatgctcagc
gggtgcattgactccggtaaagcgcatatgatacaggcgctcggagccgatgctttttgt
cgtgtaattataacgtatgatgaggcaaaggcaagggagattgtggatgacagccgcttc
ttcaacagaaatacggtgttctatccggcaaaggatcttatattctacagtgccgatatc
agaagcaacgagcttacatcacagagaatgaaggccataagggcaatcattgaaaatgaa
ggcgacctcacggttgtcacaacgatagacggctgtgccgatatgctcatgacaagggaa
aagcttgagtcgggaattctgacatttgaagagggaggaattgttgacctcgcacagctt
aagaagcagcttgtgctgctcggatatgagaatatgggacaggtgcaggcaccgggagag
ttcggagtacgtggcggaatcattgacatcttcccgcttaccgacgagacaccggtaaga
attgaattgtgggatgatgagatagattcaattcgttcatttgatgtggagagccagcgt
tcaatcgagaggcttcagaaggtgacaatatatccggcaacggagtatgtccttacacag
gtggagatagatgacggtgttgctgccattaatgatgaagtcgcaaagcaggcggacatt
ttcaaaaaagctgacaaatatgaggaattgtcgaggcttaaggcaattcccgataatttc
aatgagacaactgatatagacaaatttgtgcattcatttgtaaaggatacagtgtcgctt
attgagtattttgacagggagacaacgctgtttgtgcttgatgagcctaacagaattgcg
gagcgcatggagcttgtcgagtttgaattcaccgacagcacgaagaacaggcttgagaag
ggctatataattccaagtcaggcagatatgatatttacatgccgcgagatatatgcgaag
gtgaactgccgcaggctgcttgtggtgtcaactcttgaatataaaccgaatgggcttgat
attgccgaacattttaaggtggattcaaagagtataagttcatacaataaccgttttgag
tatcttgttgcagacctcaaaaaatataaaaaatccggctacaggattgtgctcatatcg
aactcaagaacacgtgcgatgcgcatggttgatgatctgcgtgataacgggatagattca
tatttcagcgaggattatgacaaagctcttgttgaaggcgagattatggtaacttacggc
aacatacacaaaggttttgaatatccgatagttaagtttgttgtcattgccgaaagtgat
atattcggacaggaaaagaaagataagaagcgcagaaagaagcagtacaacggtaaggcg
attgctgactttaacgagcttgccataggtgactatgttgtacatgaaaattacggtctt
ggaatataccgcggtatcgagaagattgaagtagagggaatagagagagattatataaag
attgaatacagcggaacggatacgctttacattcttgcaacacagcttgatgtattgcag
aagtacgcaggggctgatgcgagaaagccaaagcttaacaagcttaacagtcaggaatgg
ggcaagacaaaatccaaggttaagactgctgttgagcaggtcgcaaaggatcttgtggag
ctgtatgcaaaacgccagaatgagcagggcttccagtttggcgaggatacggtgtggcag
cgtgagtttgaggagatgttcccttacgaggagacctctgaccagcttgcggcaattgaa
gatacaaagcatgatatgcagagtacaaaaattatggacagacttatatgtggtgatgtc
ggctacggtaagacggaggtcgccataagagcggcattcaaagctgtccaggacggtaag
caggttgcgtaccttgtaccgacaacgatacttgcgcagcagcattttaacacatttgaa
cagagaatgaaggacttccctgttaaggtggcgatgctgtcaagattcaggacaccgaag
gagattaagcagacgatagctgatctcaggaagggtatggttgatattgtaatcggaact
cacaggctgttatctaaggatgttgagtataaggatctggggctgcttattattgacgag
gaacagagatttggcgtgtcacacaaggagaagattaagaagcttaaggaaaatgttgat
gtccttacgctcagtgcaacacctattccgcgtacgcttcacatgagccttgtcggaata
agggatatgagtgtgcttgaggagcctccggttgacagaatgcctatacagacatttgta
actgagcagaatgatgagatggtgcgtgaagcaatcaacagagagctggcaagaggcgga
caggtatattatgtgtataacagggtgcgtaatattgatgaggctgcaagccgtatacag
cagcttgttccggatgccaatgtcgcgtatgcgcacggacagatggacgagaagacgctg
gaagctattatgtatgattttataaatggtgacatagacgttcttgtatcaacgacaatc
attgagacgggtctggacatttccaatgttaatacaatgattatcgaggatgcagaaaat
ctcggactgtcgcagctatatcagctccgcgggcgtgtgggacgttctaacaggactgct
tatgcattccttctgtaccgcagggggaagatgctgaaggaggttgcggagaagaggctt
catgcaatcagggaattcactgagcttggttcaggctttaagattgcaatgaaggatctt
gagatacgtggtgccggtaatgtacttggagaagcgcagcacggccacatggcagcggta
ggatatgacctgtactgcaaaatgcttaacgaggctgtcaatgaacttaagggaatctct
aatggtgcggattttgagacggttgtagaccttaatgtggatgcatttataccttccact
tatatccgctcagaagctcagaaacttgagatatataagcgtattgcggctattgagaca
agtgatgagcagatggatatgcaggatgaacttactgaccgattcggtgaccttccgcat
tcggcgaacaatcttctgacgattgcccttataaaatcagtggcgcacaaggcagatgtt
cgtaagataaagggtggcgtggttaataaggaagactggcgtgtggagattttcttcaaa
caggatgcggcgatagatgtggcacaaataccggattttcttgaaagacatgagccgttc
cttacattcagaccgggcaatgatccgtattttgtgtatgaagcaagacataaggacttc
ccgacagattcggcatttctggcggcgttggagactcttttggaggggattcccaagtgc
tga
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