Bacteroides pectinophilus: NQ488_02085
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Entry
NQ488_02085 CDS
T09080
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
bpen
Bacteroides pectinophilus
Brite
KEGG Orthology (KO) [BR:
bpen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpen03019
]
NQ488_02085
Messenger RNA biogenesis [BR:
bpen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ488_02085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
HDOD
Cas3_HD
TraI_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
UWN96122
LinkDB
All DBs
Position
456174..457115
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AA seq
313 aa
AA seq
DB search
MKFIETLKDGDRISDIYLCKNKATATTKTGREYESVILQDKTGCLDGKIWDPSSMGIGEY
EALDYVEVNGLVTSYNGALQLKIERLRRVGEGEYDPANYMPVSRFSIDDMYNELLGYIKG
INNGYIKKLLESFFVEDKEFIAIFKKRSAAKSIHHGFMGGLLEHSLSVTRLCAHIAKAYP
FLNEDLLIACAMLHDIGKVPEFSDFPQNDYTDEGNLLGHIVMGAEMVGEKAHGIEGFPPM
LLTEIKHCILSHHGELEYGSPKKPALAEAMALSMADNMDAKLETVREIFDSKEGGDWMGY
NRLFESNIKRTKV
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttattgagactttgaaagatggtgacaggatttcggatatttacctgtgtaag
aataaggcaacggcaaccactaagacaggacgggaatatgagagtgttatactccaggac
aagacaggctgccttgatggtaagatatgggatccttcttcaatgggaataggcgagtat
gaggctcttgattatgtagaggtaaatggtcttgtgacaagctataacggggcattgcag
cttaagattgagagactgcgcagggttggggaaggtgaatatgaccctgccaattatatg
ccggtaagccgtttttcaattgatgatatgtacaacgaactgcttggttatataaaggga
attaataacggatatattaagaagctgcttgagagtttctttgttgaagataaggaattt
atcgcaatattcaagaagcgttcggcagccaagagcatacatcatgggttcatgggggga
ctgcttgagcacagtctgagtgttacaaggctgtgcgcacatatcgccaaggcatatcct
tttctgaatgaagatctgcttatagcatgtgcgatgcttcatgatatcggtaaggtgccg
gagttctcggatttcccgcagaatgattacacggacgaagggaatcttctcggacatata
gtcatgggcgctgagatggtcggggaaaaggcgcacggtatagaaggatttccgccgatg
ctgcttacggagattaagcactgcattctgtcacatcatggggagcttgagtatggttcg
cctaagaagccggcacttgcagaggcaatggcacttagcatggcagacaacatggatgcc
aagttagagacagtcagagagatattcgacagtaaggagggcggcgactggatgggatat
aaccgcctgtttgagagtaatattaagagaacaaaggtgtga
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