Bacteroides pectinophilus: NQ488_05605
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Entry
NQ488_05605 CDS
T09080
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bpen
Bacteroides pectinophilus
Pathway
bpen02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bpen00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NQ488_05605 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpen03021
]
NQ488_05605 (rpoD)
Transcription machinery [BR:
bpen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NQ488_05605 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_20
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UWN97112
LinkDB
All DBs
Position
1193546..1194640
Genome browser
AA seq
364 aa
AA seq
DB search
MNARFEEKCKALLALAKKKKNMLDYQEIIDSFTDAEFDADKVEKVFDFLEANNVDVKISD
DVEEEEDIILDPEDDIDIEKIDLSVPEGVSIEDPVRMYLKEIGKVPLLSAEEEIELAKRM
ENGDVEAKNRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVDKFDFRKGFKFS
TYATWWIRQAITRAIADQARTIRIPVHMVETINKLLRVSRQLLQELGREPTPEEIAKEMD
IPVERVREIQKISQEPVSLETPIGEEEDSHLGDFIQDDNVPVPAEEAASTILKEQLVEVL
GTLTEREQKVLRLRFGLDDGRARTLEEVGREFNVTRERIRQIEAKALRKLRHPSRSRKLR
DFLD
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaagattcgaagaaaagtgcaaagcacttcttgcacttgcaaagaaaaagaag
aacatgctggattatcaggaaattattgattcatttacagatgctgagttcgatgctgac
aaggttgagaaagtatttgatttccttgaggcgaataatgtagatgtcaagatatctgat
gatgttgaagaagaggaagatataatacttgatcctgaagatgatattgatatcgagaag
attgacctttcggttcctgaaggtgtaagcatagaggatcctgtaagaatgtaccttaag
gagattggtaaagtgccgcttcttagtgcagaggaagagattgaacttgcaaagagaatg
gagaatggtgatgttgaggccaagaacaggcttgccgaggcaaacttacgtctggtagtc
agcatcgcaaagagatatgtaggaagaggaatgcttttccttgaccttattcaggagggt
aaccttggacttatcaaagctgtcgataagtttgattttagaaagggattcaagttttca
acatatgcaacatggtggatacgtcaggctataacaagggcaattgcggatcaggcaaga
actataagaattcctgttcatatggtagagacaatcaacaaactcttaagagtttcaaga
cagttactgcaggagcttggacgtgaaccgactccggaagagattgccaaggagatggac
atccctgtagagagggtacgtgagattcagaagatttcacaggagccggtatctttggag
acacctattggtgaagaggaagacagccaccttggagattttattcaggatgataatgtc
cctgtacctgctgaggaagcagcaagcacaatacttaaagaacagcttgtagaggtgctt
ggcacacttaccgagagagagcagaaggttctcagactcagattcggtcttgatgacgga
cgtgcaagaacacttgaggaagttggacgtgaattcaacgtaacaagagagcgtatacgt
cagattgaggcaaaagctcttcgtaagctgcgtcatccaagccgcagccgtaagttgaga
gacttccttgattga
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integrated database retrieval system
