Bacteroides pectinophilus: NQ488_06270
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Entry
NQ488_06270 CDS
T09080
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
bpen
Bacteroides pectinophilus
Brite
KEGG Orthology (KO) [BR:
bpen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
bpen03009
]
NQ488_06270 (rlmD)
Enzymes [BR:
bpen01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NQ488_06270 (rlmD)
Ribosome biogenesis [BR:
bpen03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NQ488_06270 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Cons_hypoth95
Methyltransf_15
MTS
Methyltransf_31
TRM
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_25
PCMT
Methyltransf_4
N6_N4_Mtase
PrmA
SAM_MT
Motif
Other DBs
NCBI-ProteinID:
UWN96901
LinkDB
All DBs
Position
complement(1344816..1346033)
Genome browser
AA seq
405 aa
AA seq
DB search
MTSSHNSPCNRAHSPAQNRGRKQAKPAEVCPHAARCGGCAYQGIAYKEQLDKKQEYEQKL
LSSYGSVSRIIGMDKPYHYRNKVHAAFGRDRYNNIICGSYEESSHRIVDNTACLIEDTRA
KAIIEVIRRLAGDFGLKIYDERNGTGLLRHVLIRTGHKSGQILVILVMASTFFPSKKNFI
RELIRECPEITSVVININNRRTSMILGDRQYTEYGSGYIEDTLCGITYRISPKSFYQVNA
VQTELLYTKAIELARLTGSETVIDAYSGIGTIGMTVAGHVRKVISVETNTDAVKDARRNA
KANNISNIDIYADDAGRFMRRMADNNETCDVIFMDPPRAGSDKVFLNSILKLMPSKVIYI
SCCPETLARDLAVLARRAYRVAAIQPVDMFPWTSGIETIVCLERR
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgacatcatcacataattccccatgcaatcgtgcacactcccctgcacaaaaccgaggc
agaaagcaggcaaagccggctgaagtatgtccgcatgcagcacgctgcggaggctgcgcc
tatcagggaattgcatataaagagcagcttgataaaaagcaggaatacgagcagaaactt
ctctcctcatacggcagtgtatcacgtataatcggcatggacaagccatatcattaccgt
aacaaggttcatgcggcattcggccgtgacagatacaacaatataatatgcggaagttat
gaggaatcaagccacaggattgtagacaatactgcctgccttattgaagatacacgtgcc
aaagcaataatagaagtaatacgccggctggcaggcgattttggccttaagatatatgat
gaacgtaacggtacgggacttctgcgtcatgttctcataagaacagggcacaaaagcggt
cagattcttgttattcttgtaatggcatcgacatttttcccatccaagaagaattttata
cgtgaactcatcagggaatgtcctgagataacatctgttgtcataaatattaataacagg
cgtacgagcatgattctcggcgacagacagtatacggaatacggaagcgggtatatagaa
gatacgctctgcggaataacctaccgcatatcgcctaagtcattttatcaggtaaatgcc
gtacagacagagcttctctatacaaaagccattgagcttgcgcgtcttacaggcagcgag
accgtcattgatgcttacagtggaatcggaactataggcatgaccgttgccggacacgtc
cggaaggttatcagcgttgagaccaataccgatgcagtaaaagatgcacgccgtaatgcc
aaagccaataatatcagcaatatcgatatctacgccgatgacgccggtcgctttatgaga
cggatggcagataataacgagacctgcgatgttatatttatggatccgccacgtgccgga
agcgataaggtatttcttaactctatactgaagcttatgccttcaaaagtcatctacatc
tcatgctgtcccgaaacacttgcacgggaccttgcagtgcttgcgcgccgtgcataccgt
gtagcggctatccagcctgttgatatgttcccatggacatcgggaattgagacaattgta
tgccttgagcgccgctaa
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