Bacteroides pectinophilus: NQ488_11865
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Entry
NQ488_11865 CDS
T09080
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bpen
Bacteroides pectinophilus
Pathway
bpen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ488_11865 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpen03021
]
NQ488_11865 (rpoC)
03400 DNA repair and recombination proteins [BR:
bpen03400
]
NQ488_11865 (rpoC)
Enzymes [BR:
bpen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ488_11865 (rpoC)
Transcription machinery [BR:
bpen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ488_11865 (rpoC)
DNA repair and recombination proteins [BR:
bpen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ488_11865 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Tudor_krimper_1st
Motif
Other DBs
NCBI-ProteinID:
UWN97159
LinkDB
All DBs
Position
complement(2528720..2532373)
Genome browser
AA seq
1217 aa
AA seq
DB search
MSQETTNETYQPMTFDSIKIGLASPEKIMEWSHGEVTKPETINYRTLKPEKDGLFCERIF
GPSKDWECHCGKYKKIRYKGVICDRCGVEVTKASVRRERMGHIALAAPVSHIWYFKGIPS
RMGLILDLSPRVLEKVLYFASYIVLDRGETNLADKQILSEAEYREACDQYGSNAFRVGMG
AEAIMELLQKIDLEKDSAQLKSELADASGQKRVRIVKRLEVVEAFRESGNKPEWMILTAI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRIINRNNRLARLKELGAPDIIVRNEKRMLQEA
VDALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK
IYQCGLPKEMAIELFKPFVMKELVTSGKAHNVKSAKKMVERLETEVWDVLEDVIKEHPVM
LNRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRF
LLLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGVKGEGKYFKSVNEAILAYENGVI
TLHSIINVKVQKENAEGEIVEGVIKSTLGRFLFNEILPQDLGFVDRSKPENFLALEVDFH
VGKKKLKAILEKVINTHGSTRTAEVLDDIKAIGYKYSTRAAMTVSISDMTVPEQKKQLIA
DAESTIEKIAKNYRRGFITEEERYKEVIEVWKETDATLTDALLSGLDKYNNIFMMADSGA
RGSNQQIKQLAGMRGLMADTSGRTIELPIKSNFREGLDVLEYFISAHGARKGLSDTALRT
ADSGYLTRRLVDVSQEQIIRETDCAENRKEIPGMYVTEFTEGKEMIESLKDRITGRYLAE
DVKDPATGEVIVAANHMVTPKRAEAILKTGIQKIKIRTILTCRSHIGVCAKCYGANMATG
QAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAI
IAEFGGVATIKDTKKKREIIITDNESGQSKTYLIPYGSRIKILDGAVLEAGDELTEGSVN
PHDLLKIKGVRAVQDYMIREVQKVYRLQGVEINDKHIELIVRQMLKKIRIESAGDSEYLP
GTTVDVLDFNETNERLEEEGKEQAVGTPIMLGITKASLATNSFLSAASFQETTKVLTEAA
INGKVDPLIGLKENVIIGKLIPAGTGLRRYRNVKIDTGRVYNEIENYDGDYELNLSEDTE
DTEADAATVAADNSTEE
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagaaacaacaaatgaaacatatcagccaatgacatttgattctatcaagatt
ggtcttgcttctccagagaagattatggagtggtctcacggcgaggtaactaagccggag
accatcaattacagaacacttaagcctgagaaggatggattgttctgtgagagaatcttt
ggaccgagcaaagattgggaatgtcattgtggaaaatataagaagatcagatataaaggc
gttatctgtgacagatgtggcgttgaggtcactaaggccagcgtacgtcgtgagcgtatg
ggacacatcgcacttgcagctcctgtttcacatatctggtattttaagggaatcccaagc
cgtatgggtctgattcttgatctttctccacgtgtacttgagaaggttctgtacttcgct
tcgtatattgtgcttgacagaggtgagactaatcttgccgataagcagattctttcagag
gcagaatacagagaagcatgcgaccagtacggaagcaatgctttcagagtaggcatgggt
gcggaagctattatggaacttcttcagaagattgatcttgagaaggattcagcacagctt
aagtcagaacttgcagatgcttcaggacagaagagagtaagaatagttaagagacttgag
gttgtagaggcattcagggagtcaggtaataagcctgagtggatgatacttactgcaatt
cctgtaattccaccggatttaagacctatggtccagctcgatggtggacgttttgctaca
tcagatcttaacgatctttacagaagaatcattaaccgtaacaatcgtcttgcaagactt
aaggaactcggagctcctgatatcattgtccgtaatgagaagagaatgcttcaggaagca
gttgatgcgcttattgataatggcagaagaggacgtcctgtaacaggtccgggtaacaga
gctctgaagtcactttcagatatgttaaagggtaagcagggacgtttccgtcagaacctc
cttggtaagagagttgactattcaggacgttcagttatcgttgtaggtcctgaacttaag
atatatcagtgcggtctccctaaggagatggcaattgagcttttcaagcctttcgttatg
aaggagcttgtaacaagcggtaaggcacataatgttaagagcgccaagaagatggttgag
agacttgagactgaagtatgggatgtacttgaggatgttattaaagagcatccggttatg
cttaatcgtgctcctacacttcacagacttggtattcaggcttttgagccaatccttgta
gaaggtaaggctatcaagctgcatccgcttgtatgtacagcattcaatgccgatttcgat
ggtgaccagatggctgtccatcttccactttcagtagaagcacaggcagagtgccgtttc
cttcttctgtcacctaacaaccttctgaaaccttcagatggtggtcctgttgccgttcct
tcacaggatatggtacttggtatctattaccttacacaggaaagaccgggagttaagggt
gaaggtaagtattttaagagcgttaatgaagcaatccttgcatatgagaacggagttata
acacttcattcaattatcaatgttaaggttcagaaagagaatgctgagggcgagatagtt
gaaggtgtgattaagtcaacactcggaagattcctcttcaacgagattcttccacaggat
cttggttttgttgacagaagcaagcctgagaatttcctcgcacttgaggtagatttccat
gtaggtaagaagaagcttaaggctatccttgagaaggttatcaatacacatggttctaca
cgtacagcagaagttcttgatgatatcaaggctatcggttataagtattcaacaagagct
gccatgacagtttctatttctgacatgacagtgcctgagcagaagaagcagcttattgct
gatgctgagagcacaatcgagaagattgccaagaactatcgtcgtggtttcattacagaa
gaagagagatataaggaagtaatagaggtttggaaggagactgatgcaactcttacagat
gcccttctttcaggtctcgataaatataacaacatcttcatgatggctgattcaggtgcc
cgtggttctaatcagcagattaagcagcttgcaggtatgcgaggacttatggctgataca
tcaggtcgtacaatcgaacttcctatcaagtcgaacttccgtgaaggacttgatgtactg
gaatacttcatctcagcccatggtgccagaaagggactttctgatacggctcttcgtaca
gccgattcaggttaccttacaagacgtcttgttgacgtttcccaggaacagattatccgt
gagacagactgtgctgagaaccgcaaggagattcctggcatgtatgtaacagagttcacg
gaaggcaaggagatgattgagtctcttaaggatcgtatcacaggaagatatcttgctgag
gatgttaaggatcctgcaacaggtgaagtaattgttgctgctaaccatatggttacacct
aagagagctgaagctatcttgaagacaggtattcagaagattaagatcagaacaatcctt
acatgccgttcacatatcggtgtatgtgccaagtgttatggtgccaacatggcaacaggc
caggctgtacaggtaggtgaggcagttggtattatcgctgcacagtcaatcggtgagcct
ggtacacagcttactatgcgtactttccataccggtggtgttgcaggtgatgatattaca
cagggtcttcctagagtagaagaactttttgaggcaagaaagccaaagggacttgcaatt
attgctgagttcggtggtgttgccacaattaaggatacaaagaagaaacgtgagattatc
attacagataatgagagcggacagtcaaagacatatcttatcccttacggttcaagaatc
aagattcttgacggtgctgttcttgaagccggtgatgagcttacagaaggtagcgttaac
ccacatgatcttcttaagattaagggtgtacgtgcagttcaggattacatgatccgtgag
gtacagaaagtttaccgacttcagggtgttgagattaacgataagcatatcgagcttatt
gtacgtcagatgctcaagaagataagaattgaatcagcaggtgattcagaataccttcct
ggaacaacagttgatgttcttgactttaatgagactaatgagagacttgaagaagagggc
aaggagcaggcagtaggaacacctattatgcttggtattactaaggcatctcttgcgact
aactcattcctttcagcagcttcattccaggaaacaactaaggttcttactgaagcagca
attaatggtaaggtcgatccacttatcggtcttaaggagaatgtcatcatcggtaagctt
attcctgccggtacaggacttcgccgttaccgcaatgttaagattgatacaggtcgtgta
tacaatgagattgagaattatgacggtgattatgaactcaatctttcagaggatacagag
gatacagaagcagatgcagcaacagttgcagctgataatagtacagaagaataa
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