Bordetella pertussis 18323: BN118_0015
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Entry
BN118_0015 CDS
T02296
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bper
Bordetella pertussis 18323
Pathway
bper03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bper00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN118_0015 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bper03021
]
BN118_0015 (rpoC)
03400 DNA repair and recombination proteins [BR:
bper03400
]
BN118_0015 (rpoC)
Enzymes [BR:
bper01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN118_0015 (rpoC)
Transcription machinery [BR:
bper03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN118_0015 (rpoC)
DNA repair and recombination proteins [BR:
bper03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN118_0015 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
CCJ61440
UniProt:
A0A0T7CJ14
LinkDB
All DBs
Position
15774..20018
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFRALM
GAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFADVSEVQRAYDNG
EVELQTRITVRLTEYERDEQGEWQPVKHRHETTVGRALLSEILPKGLPFTVLNKALKKKE
ISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIAMEDMLIPKAKEGILAEASRE
VKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTSHGYAMKALVEGGEVIEPLRDRIL
GRVAAIDVVNPDTQETAIAAGTLLDEDLVDLIDRLGVDEVKVRTPLTCETRHGLCAHCYG
RDLGRGSHVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLLGDGEAVKAGTRLAS
WDPLTRPIVSEYSGAVRFENIEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKL
VNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPR
VAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDPGDTEFIPGEQVERSELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAYHIARKDKEALEAAERE
AARQLANPFEDAPVTVGGEPEAPAADTPSDDSAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctcttcaagcaagtctcgcaagacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaagatccgttcgtggtctttcggcgaagttcgcaag
cccgagacgatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgcgccaag
atcttcggtcccatcaaggactacgaatgcttgtgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgcgaaaagtgcggcgtggaagtcaccgtcgccaaggtgcgccgcgag
cgcatgggccatatcgaactggccagcccggttgcgcacatctggttcctcaagagcctg
ccgtcgcgcctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcctggtgcgtgatcgagcccggcatgacgccgctcaagcgcggccagatcatg
tccgatgacgacttcctggccaagaccgaagagtacggcgacgacttccgtgccctgatg
ggcgccgaggccgtgcgcgaactgctgcgcaccatcgacatcgatcgcgaagtcgagacg
ctgcgcggcgagctcaaggccaccagctcggaagccaagatcaagaagatctccaagcgt
ctgaaggtgctggaaggcttccagaagtccggcatcaaggccgaatggatggtcatggaa
gtgctgcccgtgttgccgccggacctgcgtccgctggtgccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctcaag
cgcctgctcgaactgaaggcgcccgagatcattctgcgcaacgaaaagcgcatgctgcag
gaagccgtcgactcgctgctcgacaacggccgccgcggcaaggccatgaccggcgccaac
aagcgccagctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgccag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtcatcgtggtgggcccgcag
ctcaagctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagccgttc
atcttcaatcgcctggagatgatgggcctggccacgaccatcaaggctgccaagaagctg
gtcgagagccaggagccggtggtgtgggacatcctcgaagaggtgatccgcgagcacccg
gtcatgctcaaccgtgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggccatccagctgcacccgctggtctgcgccgccttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtgccgctgtcgctcgaagcgcagctcgaagcg
cgtacgctgatgctggcctcgaacaacgtattgttcccggccaacggcgagccgtccatc
gtgccgtcgcaggatatcgtgctgggcctgtactacacgacccgcgaacgcatcaacggc
aagggcgaaggcattttctttgccgacgtgtcggaagtgcagcgcgcctatgacaacggc
gaagtcgaactgcagacccgcatcaccgtacgcctgaccgagtacgagcgcgacgagcag
ggcgagtggcagccggtcaagcaccgccatgaaacgacggtcggccgtgcgctgctgtcc
gagatcctgcccaagggcctgcccttcacggtgctgaacaaggccctgaagaagaaagag
atctcgcgcctgatcaaccagtcgttccgccgttgcggcctgcgcgacacggtgatcttt
gccgacaagctgatgcagtcgggcttccgcctggccacgcgcggcggcatctcgatcgcc
atggaagacatgctgatcccgaaggccaaggaaggcatcctggccgaggccagccgcgag
gtcaaggaaatcgacaagcagtactcgtcgggtctggtgacctcgcaagagcgctacaac
aacgtggtcgatatctggggcaaggccggcgacaaggtcggcaaggcgatgatggagcaa
ctggccaccgagccggtcgtcaaccgtcatggcgaggaagtgcgccaggaatcgttcaac
tcgatctacatgatggccgactcgggcgcccgtggttcggccgcccagattcgccagctg
gccggcatgcgcggcctgatggccaagccggacggctcgatcatcgagaccccgattacc
gccaacttccgcgaaggcctgaacgtactgcagtacttcatctcgacgcacggcgcgcgc
aagggcttggccgataccgcgctgaagacggcgaactcgggctacctgacgcgccgcctg
gtcgacgtgacccaggatctggtgatcaccgaagacgattgcggcaccagccatggctac
gcgatgaaggccctggtcgagggcggtgaagtcatcgaaccgctgcgcgaccgtatcctc
ggccgcgtggccgcgatcgacgtcgtcaaccccgacacgcaggaaacggccatcgcggct
ggcaccctgctcgacgaagacctggtcgacctgatcgaccgcctgggcgtggacgaagtc
aaggtccgcacgccgctgacgtgcgaaacgcgtcacggcctgtgcgcgcattgctatggc
cgcgatctgggccgcggttcgcacgtcaacgtgggcgaggccgtcggcgtcatcgccgcg
caatcgatcggcgaaccgggcacgcagctcaccatgcggacgttccacatcggtggcgcc
gcttcgcgttcggccctggccagcgccgtggaaaccaagtccaacggcacggtcggcttc
gccagcacgatgcgctatgtcaccaacgccaagggcgagcgtgtggcgatttcgcgttcc
ggcgaactggccatcttcgacgacaacggccgcgagcgcgagcgccacaagatcccttat
ggcgccaccgtcctgcttggcgacggcgaagcggtcaaggccggcacccgtctggccagc
tgggatccgctgacccgtccgatcgtgtccgagtacagcggcgcggtgcgcttcgagaac
atcgaagaaggcgttaccgttgccaagcaggtcgacgaagtcaccggcctgtcgacgctg
gtcgtgatcacgcccaagacgcgcggcggcaagatcgtcatgcgtccgcagatcaagctg
gtcaacgagaacggcgaagacgtcaagatcgccggcaccgatcactcggtgaacatctcg
ttcccggtgggtgcgctgatcaccgtgcgcgacggccagcaggttgccgtgggcgaggtc
ctggcgcgtattccgcaggaatcgcagaagacccgcgacatcaccggcggtctgccgcgc
gtggccgagctgttcgaagcccgttcgcccaaggatgccggcatgctggccgaagtcacg
ggtacggtatcgttcggcaaggacaccaagggcaagcagcgcctggtcatcaccgacctg
gaaggcgtcagccacgagttcctgatcctgaaggaaaagcaggttctggtgcacgacggc
caggtggtgaacaagggcgaaatgatcgtcgacggcccggccgatccgcacgacatcctg
cgcctgcagggcatcgagaagctggcgacctacatcgtcgacgaagtgcaggacgtctac
cgtctgcagggcgtgaagatcaacgacaagcacattgaagtgatcgtccgccagatgctg
cgccgcgtgaacatcgtcgatccgggtgacaccgagttcatcccgggcgagcaggtcgag
cgttcggaactgctcaacgagaacgatcgcgtggtcgccgaggacaagcgtccggcttcg
tacgacaacgtgctgctgggtattaccaaggcctcgctgtcgaccgattcgttcatctcg
gcggcgtcgttccaggaaacgacccgcgtgctgaccgaagcggcgatcatgggcaagcgc
gacgacctgcgcgggctgaaggaaaacgtgatcgtcggccgtctcatcccggctggtact
ggcctggcgtatcacattgcccgcaaggacaaggaagcgctggaagctgccgagcgcgaa
gccgcccggcagctggccaacccgttcgaggatgcgccggttacggtcggcggcgaaccg
gaggctccggccgccgatacgccgtcggacgactcggccgagtga
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integrated database retrieval system
