Bordetella pertussis 137: Q425_22960
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Entry
Q425_22960 CDS
T03754
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpeu
Bordetella pertussis 137
Pathway
bpeu03030
DNA replication
bpeu03430
Mismatch repair
bpeu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q425_22960 (dnaE)
03430 Mismatch repair
Q425_22960 (dnaE)
03440 Homologous recombination
Q425_22960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpeu03032
]
Q425_22960 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpeu03400
]
Q425_22960 (dnaE)
Enzymes [BR:
bpeu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q425_22960 (dnaE)
DNA replication proteins [BR:
bpeu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q425_22960 (dnaE)
DNA repair and recombination proteins [BR:
bpeu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q425_22960 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AJB26916
LinkDB
All DBs
Position
2403157..2406648
Genome browser
AA seq
1163 aa
AA seq
DB search
MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYK
GARGAGVKPVAGSDVWLTNDDDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAE
VRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLARQWGQLFPGSYYIELQRAGFD
GDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQ
DQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQL
SEEGLEKRLQFLFPDEAERNAKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNG
VPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVI
DYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLER
TLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPG
QENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQ
AAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAMLALYRPGPLESGMVDDFVNR
KHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHP
TEFLAATLSSDMDDTDKVQIFVRDAQDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRT
MRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVSKHAVNRRTIEALIKAGAFDT
IEPNRAAMLVSVGTAMEAAEQAARSANQSSLFGDDSGDVVAGELTKVAPWNLHTTLTEEK
TALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAV
LDDGTAQIEISVFNELYEKHRGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLARE
ARAKSLRIRLNGQADAARLRQLLNPFRAEPENGVPGVPVDVVYRRNNFLCTVRLGEDWRV
RMADTLLENLNDWAKPDGVEVTY
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaagccgtaacaaacccgcccccatttgtacatttgcgcgtccattccgagttc
tccgtctcggatggcatcgtgcgcatctccgatctgatcaagcgcgtggccaagctgggc
cagccggccgtggcgctgacagacctgtcgaacatcttcggcctgatcaagttctacaag
ggcgcgcgcggcgccggggtcaagccggtggccggcagcgatgtctggctgaccaacgac
gatgaccgcgaaaagccgttccgtctcctgctgctggtgcgcaaccaccagggctacctc
aacctgtgcgagctgctgacgcgctcgttcctggagaatcagtacaaggggcgcgccgag
gtgcgccgcgaatggctgcagggccaggaagggctgatcgtgctgtcgggcgcgcgcggc
ggcgacgtcggccaggcgctggaagccggcaatgccgtcacggcgctgtcgctggcgcgc
cagtggggccagctgtttccgggttcgtactacatcgaattgcagcgcgccggcttcgac
ggcgacgaaacctatacccaggccgccatgcggctggccgccgaggcggggctgccggtg
gtggccacccatccggtgcagttcctggaccgcgacgagttccaggcgcacgaggcgcgc
gtgtgcatcgccgaaggcgagatcctcgccaatccgcggcgggtgcggcgctacacgcag
gaccaatacctgctcagttccgaggaaatggcgcgccgcttcgccgacgtgccctcggcg
ctggccaatacggtcgagatcgcgcggcgctgcaacctgaccctggtgctgggcaagccg
cgcctgccgaacttccccacgccggacggcgtgacgctggacgactacctggtccagctg
tccgaggaaggcctggaaaagcgcctgcagttcctgttccccgacgaggccgagcgcaac
gccaagcgcgaccagtactacgaacgcctgcgctgggagtgcaagaccatcatccagatg
ggctttcccggctacttcctgatcgtgcaggacttcatcaactggggcaagaacaacggc
gttccggtcgggccggggcggggctcgggcgccggctcgctggtggcctacgcgctgggc
attaccgacctggatccgatccgctacgacttgctgttcgagcgcttcctgaatccggag
cgggtgtcgatgcctgacttcgatatcgacttctgccaggacaaccgcgaacgggtcatc
gactacgtcaagatgaagtacgggcgcgaggcggtcagccagatcgccaccttcggcacc
ctgggcgccaaggcggtggtgcgcgacgccggccgcgtgctggacatgccctacctgttc
tgcgatgccctgtccaagctgatcccgttcaacccggccgacccgtggacgctggagcgc
acgctcaaggacgagccggccttcaaggaccgctacgagcaggaagaggaagtgcgcgcc
ctggtcgacctggcgcgcccgctcgaaggcctgacgcgcagcatcggtatgcacgccggc
ggggtgctcatcgcgccgggcaagctgaccgatttctgcccgctgtattgccagcccggc
caggagaacagcgcggtctcccagttcgacaaggacgacgtcgaggcggccggcctggtg
aagttcgacttcctgggcctgcgcaacctgaccatcctggactgggcggtgcgcttcgtg
cgccagttcaatgccgacaagcgcgacttcgacgtcatggccctgtcgctggacgaccag
gccgcgtacaaggtgctgtgcgacgccaacacgaccgcggtgttccagcttgaatcgcgc
ggcatgaaagagctgctcaagaagctgcgccccagcactttcgaagacatcatcgccatg
ctggccctgtaccggccggggccgctcgaatccggcatggtggacgatttcgtcaaccgc
aagcacggccgcgccgcggtcgattatttccacccggacctggaaggcaccctgcgcagc
acgtacggggtcatcgtctaccaggaacaggtgatgttgatctcgcagatcatcggcggc
tactcgctgggcggcgccgacctgctgcggcgcgccatgggcaagaaaaagcccgaggaa
atggccaagcaccgcgaactgttcgagcagggcgcgcgcgagaaggggcatgatcccgac
ctggcggtcaagctgttcgacctgatggagaagttcgcgggctacggcttcaacaagtcg
cactcggccgcctatgcgctgatcgcctaccagaccgcatggctgaaggcctaccatccc
accgagttcctggccgccacgctgtcgtccgacatggacgataccgacaaggtgcagatc
ttcgtgcgcgacgcccaggacaacggcgtcgaggtgctgccgcccgatgtcaacgcctcg
ggctatcgcttcgaaccggtggcggacaagcacaccgagcagggcaaaccgccgcgcacc
atgcgctacggcctgggcgcggtcaaaggcaccgggcagggcgcggtcgaggaaatcctg
cgcgcgcgccaggagggcggcccgttcgccaatctgttcgacttctgccgccgcgtcagc
aagcacgcggtcaaccggcgcaccatcgaggccctgatcaaggccggcgcgttcgatacc
atcgaacccaaccgcgccgccatgctggtctcggtcggtacggcgatggaggcggccgag
caggccgcgcgcagcgccaaccagtcgtcgctgttcggcgacgacagcggcgacgtggtc
gccggcgagctgaccaaggtcgcgccctggaacctgcacaccacgctaaccgaggaaaag
acggcgctgggctattacttcagcggccacctgttcgacgcctggcgcgacgaggtgcgc
cgcatcgtgcccatgcagctggcgcgcctggagccgcagcgcgacctgcaatggatgtgc
ggggtgctggccggcgtgcgcaccatgatgacgcggcgcggcaagatggtgttcgccgtg
ctcgacgacggcacggcgcagatcgagatctcggtgttcaacgagctgtacgagaagcac
cgcggccgcctgcgcgaagaccagttgctggtggtgcagggcaaggtcagcaacgacgag
tactccggcggcatgcgcatcgtggccgagcagctgtacgacctgcagctggcgcgcgag
gcgcgcgccaagtcgctgcgcatccggctcaacggccaggccgacgcggcgcgcctgcgc
cagctgctcaacccgttccgggccgagcccgagaacggcgtgcccggcgtgccggtcgac
gtggtctaccgcaggaacaatttcctgtgcacggtgcggctgggcgaagactggcgcgtg
cgcatggccgacacgctgctcgagaacctgaacgactgggccaagcccgacggcgtcgag
gtcacctactga
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