Alkalihalophilus pseudofirmus: BpOF4_00240
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Entry
BpOF4_00240 CDS
T01165
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bpf
Alkalihalophilus pseudofirmus
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpf03032
]
BpOF4_00240 (topA)
03400 DNA repair and recombination proteins [BR:
bpf03400
]
BpOF4_00240 (topA)
Enzymes [BR:
bpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BpOF4_00240 (topA)
DNA replication proteins [BR:
bpf03032
]
Prokaryotic type
DNA Topoisomerases
BpOF4_00240 (topA)
DNA repair and recombination proteins [BR:
bpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BpOF4_00240 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
ADC48117
UniProt:
D3FT49
LinkDB
All DBs
Position
complement(2328113..2330185)
Genome browser
AA seq
690 aa
AA seq
DB search
MADYLVIVESPAKAKTIGKYLGKKYIVKASMGHVRDLPKSQMGVDVEENFQPKYITIRGK
GPVLKELKTAAKKVKRIYLAADPDREGEAIAWHLAHSLNIDEQSDCRVVFNEITKQAIKD
AFKTPRKINMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVKMIIEREK
EIQAFVPEEYWTIQGKFSLGDEAFDAKFYGVDGKKQELKSEEEVQAVLKQLKGKSFDVAS
VKKKERKRNPVTPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIDLGKEGTVGLITYMR
TDSTRISETAQNETRQYIVEQFGEEYTRVGQRAVKKDKKAQDAHEAIRPTAVFKDPKSLK
SYLSRDQLRLYRLIWERLVASEMAPAIMDTMSVDLVNEGVLFRATGSKVKFPGFMKVYIE
GNDDGKKEEDRLLPNLEEGQKVKKESIDPNQHFTQPPPRYTEARLVKTMEELGIGRPSTY
APTLDTIQKRGYVALEEKRFVPTELGEIVLELIVEFFPEILDVEFTAKMEGDLDSIEEGN
HEWVHIIDGFYQGFEKRLKVAEEEMKEVEIKDEPAGEDCEKCGHEMVYKMGRYGKFMACS
NFPECRNTKAIVKDIGVKCPTCKEGNIVERKSKKRRTFYGCDRYPECEFISWDKPISRPC
PKCSAMLVEKKTKKGVNVQCSSCDYKEEAN
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggccgattatttagtaatcgttgaatctcccgccaaagcaaagaccattggtaaatat
ttaggcaaaaaatacattgtaaaggcttcaatgggacatgtcagagacttaccaaaaagt
caaatgggagtagatgttgaagaaaattttcaaccaaagtatattacaatccgcgggaaa
ggccccgtgttaaaagaattaaagacagctgctaaaaaagtgaaacgaatttatctcgca
gctgaccccgatcgtgaaggagaggctatcgcttggcatcttgcccatagtcttaatatt
gatgagcagtctgattgtcgcgtagtgtttaatgaaattacaaagcaggcaattaaagat
gcatttaaaacaccgagaaaaattaatatggatttggtagatgctcagcaagcacgacgc
attttagaccgtttagttggctataatattagtcctcttttatggaaaaaagttaaaaaa
ggattaagtgcaggtcgtgttcaatctgtcgccgtcaaaatgattattgagcgtgagaaa
gaaatacaagcgttcgtacctgaagaatattggaccattcaaggcaagttctcattaggg
gatgaggcttttgacgctaaattttacggagtagacggcaagaagcaagaacttaaatca
gaggaagaggtccaagcggttttaaagcaattaaaaggtaagtcgtttgatgtggcatct
gtaaaaaagaaagaacgtaaaagaaaccctgtaactccatttactacctcttctcttcag
caagaggctgcaagaaagctgaattttagagcaaagaaaacaatgatgattgctcagcag
ttatatgaggggattgacctaggcaaggaagggacagttggtttaattacgtacatgcgt
accgactctacacgaatctcagagactgcgcaaaatgaaacaaggcaatacattgtagaa
caatttggggaagaatacacgagagtaggacagcgtgcggtgaagaaagataagaaagca
caagacgctcacgaagctattcgccctactgctgtatttaaagatcctaaaagtttaaag
agctatttatcacgtgaccagcttcgtttgtatcgtctaatctgggaacgtttagttgca
agtgaaatggctccagctattatggatacgatgtctgtggaccttgtaaacgaaggagta
ctatttagagcaacaggttcgaaagtgaagtttcctggttttatgaaagtgtatatcgag
ggaaatgatgacggaaagaaagaagaagaccgtctgctgcctaaccttgaagaaggtcaa
aaagtaaagaaagaatctattgacccgaaccagcactttactcagcccccgccaagatat
acagaggcgagactagtaaaaacgatggaagagttagggattggcagaccgtcaacctat
gcacctacacttgatacgattcaaaagcgtggatatgtggctcttgaagaaaaaagattt
gttccgacagaattaggtgaaattgtattagagttaatcgttgaattcttcccagaaatt
ttagacgtggaatttacagctaaaatggaaggtgacctcgactctattgaagaagggaat
catgaatgggtccacattattgatggtttttaccaaggctttgaaaagagacttaaggtt
gcagaagaagaaatgaaagaagtcgagataaaagatgaacctgctggtgaagattgtgaa
aaatgtggacatgaaatggtgtataaaatgggacgctacggaaagttcatggcatgttct
aatttcccagaatgtcgaaacacgaaagcaattgtaaaagatatcggtgtgaaatgtccg
acgtgtaaagaaggaaatatcgtagagcggaaaagtaagaaacgtcgtacattttacgga
tgtgaccgctacccagaatgtgaattcatctcatgggacaaaccaatttctcgtccgtgt
ccaaaatgttccgcgatgctcgttgagaagaaaacgaaaaaaggtgtcaatgttcaatgt
tcttcatgcgattacaaagaagaagcaaattaa
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