Alkalihalophilus pseudofirmus: BpOF4_00935
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Entry
BpOF4_00935 CDS
T01165
Symbol
phrB
Name
(GenBank) Deoxyribodipyrimidine photolyase, FAD-binding PhrB
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
bpf
Alkalihalophilus pseudofirmus
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpf03400
]
BpOF4_00935 (phrB)
Enzymes [BR:
bpf01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
BpOF4_00935 (phrB)
DNA repair and recombination proteins [BR:
bpf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
BpOF4_00935 (phrB)
Prokaryotic type
BpOF4_00935 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ADC48255
UniProt:
Q04449
LinkDB
All DBs
Position
complement(2460005..2461444)
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AA seq
479 aa
AA seq
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MGNSDSLKAVWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDPKTASVEPVHHDYFF
QTVMQFKQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGDGRLRDEAAEH
FLAKQSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKERKRTPAVIKRDVLLGS
VHKGTAPDREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSITG
TSRLSPYIKTGAVSSRSIYYHILNAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREI
MEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLI
DWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSKRFDENGTYIRT
YIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIVDHSKQRKKALSFFKGDDEE
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
ttggggaatagcgattcacttaaggcagtttggtttagaagagactttagacttcatgac
catacggcattaaagcatgcaatagaggcgattgaaaaacatggtggcaagtggctggcc
tttttctatttagatcctaaaacagcatcagttgaaccggttcatcatgattattttttt
caaaccgtcatgcagtttaaacaaatgcttaaaactaatggaggagatctctacattatt
acgggtacaattgaaggcgcactttctaaattgctccaagcttttcctgaaatagatgcc
gtgtatgcaaacgatgatcgtgtaggggatggaaggctaagagatgaagcggcagaacat
ttccttgctaaacaatcgatacccttctatacatttgaggatgcttatttaacagagcct
gatcaagtattaaaaaaagacggcactccttacaaagtatttaccccatattataaggct
tgggcaaaagaaaggaagcgtaccccggctgttattaagagagatgtgttgttaggttca
gttcataaaggtactgcacccgaccgggaggcggaaactttatttaacaacctaataaag
aaatgcagctatgattggtctgccataggcgaggagcatgcaataaagagacttcaaatg
tttacgaaaaaaaggctctcaggctataaggcgaatcgtgattttccaagtataaccggg
accagccggctttcaccatatataaaaactggtgccgtgtctagtagaagtatttattat
catattttaaatgctgaagcagattcctatagtgccgaaacatttttaaaagagttagca
tggagagatttttatcgtatggttcatttttacgagccagattgtaaagaccgtgaaata
atggaggggtaccgagagttgaactggagtcatgatcaagacgatttaacttcatggaaa
cgtggagagactggctttccgattgtagatgcaggaatgaggcaattgttgaatgaaggc
tggatgcataatcggctcagaatgatcactgcctcgtttcttaccaaagatttgttaatt
gattggcggttgggggagcggtattttgaacgcatgctgattgattacgatccttcttct
aatatcggaggctggcaatgggccgcctcagtagggacggatgctgtaccttattttaga
atctttaatcctgttactcaatcaaaacgatttgatgagaatggtacctatatacgcacc
tatatcccggagcttaatcatgtgcctgatcattatatacatgagccgtggaaaatgagt
gaagaagaacaagtcaagtataaatgcaggctagatgaggattatcctctgcctatcgtt
gaccacagtaagcaaaggaagaaagctttatcgttttttaaaggtgacgatgaggaatga
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